Variant report
| Variant | rs9861644 |
|---|---|
| Chromosome Location | chr3:88637331-88637332 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11915416 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs13076212 | 0.90[EUR][1000 genomes] |
| rs13078648 | 0.93[EUR][1000 genomes] |
| rs13083695 | 0.93[EUR][1000 genomes] |
| rs13099003 | 0.90[EUR][1000 genomes] |
| rs1908599 | 0.90[EUR][1000 genomes] |
| rs1979750 | 0.90[EUR][1000 genomes] |
| rs28654850 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6551341 | 0.90[ASN][1000 genomes] |
| rs6551353 | 0.96[ASN][1000 genomes] |
| rs6776805 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7431389 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7610234 | 0.89[EUR][1000 genomes] |
| rs7629888 | 0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7646670 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7651671 | 0.93[EUR][1000 genomes] |
| rs9821806 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs9832715 | 0.94[EUR][1000 genomes] |
| rs9861684 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs9863138 | 0.93[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916330 | chr3:88083580-88884125 | Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv3906 | chr3:88609226-88654550 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1014703 | chr3:88623532-88733631 | Enhancers Weak transcription ZNF genes & repeats Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:88637000-88637400 | Enhancers | HUES64 Cell Line | embryonic stem cell |
