Variant report

Variant	rs6551647
Chromosome Location	chr4:62608193-62608194
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10013153	0.82[AMR][1000 genomes]
rs11732258	0.81[AMR][1000 genomes]
rs12646895	0.85[AMR][1000 genomes]
rs13132632	0.82[AMR][1000 genomes]
rs13138257	0.82[AMR][1000 genomes]
rs2343579	0.82[AMR][1000 genomes]
rs2343580	0.80[AMR][1000 genomes]
rs4458480	0.85[AMR][1000 genomes]
rs4513598	0.88[AMR][1000 genomes]
rs4623040	0.82[AMR][1000 genomes]
rs4860100	0.82[AMR][1000 genomes]
rs62306769	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6551648	0.85[AMR][1000 genomes]
rs6551654	0.82[AMR][1000 genomes]
rs6848543	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7691739	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7691805	0.82[AMR][1000 genomes]
rs7695664	0.86[AMR][1000 genomes]
rs7698860	0.81[EUR][1000 genomes]
rs9998958	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62594600-62609400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:62597200-62609400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:62599800-62608800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr4:62607000-62608200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr4:62607200-62608600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
6	chr4:62607200-62609400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr4:62607600-62608600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:62607600-62609000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr4:62607800-62608200	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr4:62607800-62608200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr4:62607800-62608400	Strong transcription	HUES48 Cell Line	embryonic stem cell
12	chr4:62607800-62608800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr4:62607800-62609400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:62607800-62609400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:62608000-62609400	Weak transcription	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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