Variant report

Variant	rs9998958
Chromosome Location	chr4:62610653-62610654
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10013153	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11732258	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12646006	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12646895	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13132632	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13138257	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2343575	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2343578	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2343579	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2343580	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4241640	0.82[EUR][1000 genomes]
rs4371644	0.82[EUR][1000 genomes]
rs4458480	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4513598	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4623040	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4639106	0.82[EUR][1000 genomes]
rs4860100	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62306769	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6551647	0.84[AMR][1000 genomes]
rs6551648	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6551649	0.82[EUR][1000 genomes]
rs6551654	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6848543	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7376314	0.81[EUR][1000 genomes]
rs7663116	0.84[EUR][1000 genomes]
rs7684797	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7691557	0.87[EUR][1000 genomes]
rs7691558	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7691739	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7691805	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7695664	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7699021	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7699533	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62608200-62611000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
2	chr4:62608200-62611800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
3	chr4:62608200-62612800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
4	chr4:62608400-62611000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
5	chr4:62608800-62611000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
6	chr4:62609000-62610800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
7	chr4:62609000-62612400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
8	chr4:62609600-62616600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:62610200-62615600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr4:62610200-62616600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:62610400-62615200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:62610400-62616600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr4:62610400-62625400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links