Variant report

Variant	rs2343575
Chromosome Location	chr4:62626170-62626171
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10011776	0.82[AMR][1000 genomes]
rs10013153	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11732081	0.83[EUR][1000 genomes]
rs11732258	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12644190	0.83[EUR][1000 genomes]
rs12646006	0.88[EUR][1000 genomes]
rs12646895	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12648947	0.80[EUR][1000 genomes]
rs13132632	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13138257	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2343576	0.92[EUR][1000 genomes]
rs2343577	0.92[EUR][1000 genomes]
rs2343578	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2343579	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2343580	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28505735	0.82[EUR][1000 genomes]
rs35015281	0.86[EUR][1000 genomes]
rs35711461	0.83[EUR][1000 genomes]
rs36153269	0.82[EUR][1000 genomes]
rs4241640	0.88[EUR][1000 genomes]
rs4339245	0.87[EUR][1000 genomes]
rs4351047	0.84[EUR][1000 genomes]
rs4371644	0.88[EUR][1000 genomes]
rs4458480	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4495065	0.91[EUR][1000 genomes]
rs4513598	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4611958	0.83[EUR][1000 genomes]
rs4623040	0.82[AMR][1000 genomes]
rs4639106	0.88[EUR][1000 genomes]
rs4860100	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4860102	0.83[EUR][1000 genomes]
rs4860426	0.83[EUR][1000 genomes]
rs4860427	0.83[EUR][1000 genomes]
rs4860429	0.83[EUR][1000 genomes]
rs62306769	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6551648	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6551649	0.87[EUR][1000 genomes]
rs6551654	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6843246	0.83[EUR][1000 genomes]
rs6848543	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7376314	0.90[EUR][1000 genomes]
rs7663116	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7684797	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7691557	0.85[EUR][1000 genomes]
rs7691558	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7691739	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7691805	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7695664	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7699021	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7699533	0.89[EUR][1000 genomes]
rs9998958	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv829949	chr4:62615637-62761629	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62623600-62631600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
2	chr4:62623800-62632200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr4:62624000-62633000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
4	chr4:62624800-62632400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
5	chr4:62624800-62633400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
6	chr4:62625200-62632600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
7	chr4:62625200-62633000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
8	chr4:62625400-62627600	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr4:62625400-62627800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr4:62625400-62630600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:62625400-62631000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
12	chr4:62625400-62632600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
13	chr4:62625600-62627600	Strong transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links