Variant report

Variant	rs6843246
Chromosome Location	chr4:62585617-62585618
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10013153	0.80[EUR][1000 genomes]
rs11131341	0.84[MEX][hapmap]
rs11732081	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11732258	0.81[EUR][1000 genomes]
rs12509742	0.82[ASW][hapmap]
rs12510774	0.84[MEX][hapmap]
rs12642037	0.80[MEX][hapmap]
rs12644190	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12646895	0.88[CEU][hapmap]
rs12648947	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13132632	0.81[EUR][1000 genomes]
rs13138257	0.81[EUR][1000 genomes]
rs2036199	0.84[MEX][hapmap]
rs2343575	0.83[EUR][1000 genomes]
rs2343576	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2343577	0.94[ASW][hapmap];0.88[CEU][hapmap];0.93[GIH][hapmap];0.82[LWK][hapmap];0.96[MEX][hapmap];0.88[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2343578	0.84[EUR][1000 genomes]
rs2343579	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs2343580	0.83[EUR][1000 genomes]
rs28505735	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35015281	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35711461	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36153269	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4241640	0.80[CEU][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4339245	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4351047	1.00[CEU][hapmap];0.88[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4371644	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4458480	0.80[EUR][1000 genomes]
rs4495065	0.88[CEU][hapmap];0.93[GIH][hapmap];0.96[MEX][hapmap];0.88[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4513598	0.84[EUR][1000 genomes]
rs4611958	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4639106	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4860100	0.80[EUR][1000 genomes]
rs4860422	0.84[MEX][hapmap]
rs4860426	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4860427	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4860429	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62306769	0.82[EUR][1000 genomes]
rs6551649	0.94[ASW][hapmap];0.88[CEU][hapmap];0.93[GIH][hapmap];0.87[LWK][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6551654	0.81[EUR][1000 genomes]
rs6848543	0.81[EUR][1000 genomes]
rs6855108	0.83[ASW][hapmap];0.88[CEU][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.93[YRI][hapmap]
rs7376314	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7663116	0.90[EUR][1000 genomes]
rs7684797	0.85[EUR][1000 genomes]
rs7691557	0.81[EUR][1000 genomes]
rs7691739	0.81[EUR][1000 genomes]
rs7691805	0.81[EUR][1000 genomes]
rs7699021	0.88[EUR][1000 genomes]
rs7699533	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62578800-62602000	Weak transcription	Aorta	Aorta
2	chr4:62579400-62606800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr4:62580000-62587000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:62580200-62586400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr4:62580400-62586400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr4:62580400-62586400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:62580600-62586400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr4:62583800-62586400	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links