Variant report

Variant	rs7663116
Chromosome Location	chr4:62604549-62604550
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10011776	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10013153	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11732081	0.91[EUR][1000 genomes]
rs11732258	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12644190	0.90[EUR][1000 genomes]
rs12646006	0.86[EUR][1000 genomes]
rs12646895	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12648947	0.87[EUR][1000 genomes]
rs13132632	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13138257	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2343575	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2343576	0.93[EUR][1000 genomes]
rs2343577	0.93[EUR][1000 genomes]
rs2343578	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2343579	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2343580	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28505735	0.90[EUR][1000 genomes]
rs35015281	0.90[EUR][1000 genomes]
rs35711461	0.90[EUR][1000 genomes]
rs36153269	0.87[EUR][1000 genomes]
rs4241640	0.96[EUR][1000 genomes]
rs4339245	0.91[EUR][1000 genomes]
rs4351047	0.91[EUR][1000 genomes]
rs4371644	0.97[EUR][1000 genomes]
rs4458480	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4495065	0.92[EUR][1000 genomes]
rs4513598	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4611958	0.90[EUR][1000 genomes]
rs4639106	0.97[EUR][1000 genomes]
rs4860100	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4860426	0.90[EUR][1000 genomes]
rs4860427	0.90[EUR][1000 genomes]
rs4860429	0.90[EUR][1000 genomes]
rs62306769	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6551648	0.83[EUR][1000 genomes]
rs6551649	0.95[EUR][1000 genomes]
rs6551654	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6843246	0.90[EUR][1000 genomes]
rs6848543	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7376314	0.91[EUR][1000 genomes]
rs7684797	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7691557	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7691558	0.86[EUR][1000 genomes]
rs7691739	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7691805	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7695664	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7699021	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7699533	0.95[EUR][1000 genomes]
rs9998958	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62579400-62606800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr4:62590800-62606400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr4:62593600-62606000	Weak transcription	Brain Anterior Caudate	brain
4	chr4:62594600-62609400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:62596400-62606400	Weak transcription	Fetal Kidney	kidney
6	chr4:62597000-62606400	Weak transcription	Brain Substantia Nigra	brain
7	chr4:62597200-62606000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr4:62597200-62606400	Weak transcription	Fetal Heart	heart
9	chr4:62597200-62609400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr4:62597800-62606200	Weak transcription	Brain Angular Gyrus	brain
11	chr4:62599000-62606400	Weak transcription	Fetal Lung	lung
12	chr4:62599000-62606800	Strong transcription	H1 Cell Line	embryonic stem cell
13	chr4:62599200-62605400	Weak transcription	Fetal Brain Male	brain
14	chr4:62599200-62606400	Weak transcription	Brain Germinal Matrix	brain
15	chr4:62599200-62606400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr4:62599400-62606200	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr4:62599600-62606200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr4:62599800-62608800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr4:62600400-62606600	Weak transcription	Fetal Muscle Leg	muscle
20	chr4:62600400-62607000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr4:62600600-62606800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr4:62601000-62606600	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr4:62601200-62606400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:62601200-62606400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr4:62602200-62606000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr4:62602800-62605800	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr4:62603200-62605200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr4:62603800-62607800	Strong transcription	H9 Cell Line	embryonic stem cell
29	chr4:62604400-62605000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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