Variant report

Variant	rs4351047
Chromosome Location	chr4:62600423-62600424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10013153	0.81[EUR][1000 genomes]
rs11732081	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11732258	0.81[EUR][1000 genomes]
rs12644190	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12646895	0.86[CEU][hapmap]
rs12648947	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13132632	0.82[EUR][1000 genomes]
rs13138257	0.82[EUR][1000 genomes]
rs2343575	0.84[EUR][1000 genomes]
rs2343576	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2343577	0.86[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2343578	0.84[EUR][1000 genomes]
rs2343579	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs2343580	0.84[EUR][1000 genomes]
rs28505735	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35015281	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35711461	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36153269	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4241640	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4339245	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4371644	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4458480	0.81[EUR][1000 genomes]
rs4495065	0.86[CEU][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4513598	0.84[EUR][1000 genomes]
rs4611958	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4639106	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4860100	0.81[EUR][1000 genomes]
rs4860426	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4860427	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4860429	1.00[CEU][hapmap];0.83[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62306769	0.83[EUR][1000 genomes]
rs6551649	0.86[CEU][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6551654	0.81[EUR][1000 genomes]
rs6843246	1.00[CEU][hapmap];0.88[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6848543	0.82[EUR][1000 genomes]
rs6852160	0.83[AMR][1000 genomes]
rs6852161	0.82[AMR][1000 genomes]
rs6855108	0.91[CEU][hapmap]
rs7376314	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7663116	0.91[EUR][1000 genomes]
rs7684797	0.85[EUR][1000 genomes]
rs7691557	0.82[EUR][1000 genomes]
rs7691739	0.81[EUR][1000 genomes]
rs7691805	0.81[EUR][1000 genomes]
rs7699021	0.89[EUR][1000 genomes]
rs7699533	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62578800-62602000	Weak transcription	Aorta	Aorta
2	chr4:62579400-62606800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr4:62590000-62601000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr4:62590800-62606400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr4:62593600-62606000	Weak transcription	Brain Anterior Caudate	brain
6	chr4:62594600-62609400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr4:62596400-62606400	Weak transcription	Fetal Kidney	kidney
8	chr4:62597000-62606400	Weak transcription	Brain Substantia Nigra	brain
9	chr4:62597200-62606000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr4:62597200-62606400	Weak transcription	Fetal Heart	heart
11	chr4:62597200-62609400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr4:62597600-62602800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr4:62597800-62606200	Weak transcription	Brain Angular Gyrus	brain
14	chr4:62598600-62601200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr4:62599000-62600600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr4:62599000-62601800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:62599000-62606400	Weak transcription	Fetal Lung	lung
18	chr4:62599000-62606800	Strong transcription	H1 Cell Line	embryonic stem cell
19	chr4:62599200-62605400	Weak transcription	Fetal Brain Male	brain
20	chr4:62599200-62606400	Weak transcription	Brain Germinal Matrix	brain
21	chr4:62599200-62606400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr4:62599400-62606200	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr4:62599600-62603800	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr4:62599600-62606200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr4:62599800-62608800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr4:62600400-62600800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr4:62600400-62600800	Weak transcription	Fetal Muscle Trunk	muscle
28	chr4:62600400-62601200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
29	chr4:62600400-62606600	Weak transcription	Fetal Muscle Leg	muscle
30	chr4:62600400-62607000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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