Variant report

Variant	rs6852161
Chromosome Location	chr4:62622338-62622339
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2343576	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2343577	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs35015281	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35711461	0.80[AMR][1000 genomes]
rs36153269	0.82[AMR][1000 genomes]
rs4241640	0.80[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4339245	0.81[AMR][1000 genomes]
rs4351047	0.82[AMR][1000 genomes]
rs4371644	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4495065	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4639106	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6551649	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6852160	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7376314	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7699533	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv829949	chr4:62615637-62761629	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62610400-62625400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr4:62616800-62625400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:62618600-62625400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:62620600-62625400	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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