Variant report

Variant	rs12648947
Chromosome Location	chr4:62574748-62574749
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11732081	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12644190	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2343575	0.80[EUR][1000 genomes]
rs2343576	0.87[EUR][1000 genomes]
rs2343577	0.87[EUR][1000 genomes]
rs2343578	0.81[EUR][1000 genomes]
rs2343580	0.80[EUR][1000 genomes]
rs28505735	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35015281	0.86[EUR][1000 genomes]
rs35711461	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36153269	0.83[EUR][1000 genomes]
rs4241640	0.89[EUR][1000 genomes]
rs4339245	0.86[EUR][1000 genomes]
rs4351047	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4371644	0.89[EUR][1000 genomes]
rs4495065	0.87[EUR][1000 genomes]
rs4513598	0.81[EUR][1000 genomes]
rs4611958	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4639106	0.89[EUR][1000 genomes]
rs4860426	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4860427	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4860429	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58369539	0.81[ASN][1000 genomes]
rs60459182	0.81[ASN][1000 genomes]
rs6551649	0.88[EUR][1000 genomes]
rs66924184	0.80[ASN][1000 genomes]
rs6843246	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7376314	0.85[EUR][1000 genomes]
rs7663116	0.87[EUR][1000 genomes]
rs7684797	0.82[EUR][1000 genomes]
rs7699021	0.85[EUR][1000 genomes]
rs7699533	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62574600-62574800	ZNF genes & repeats	Aorta	Aorta

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