Variant report

Variant	rs58369539
Chromosome Location	chr4:62580597-62580598
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12648947	0.81[ASN][1000 genomes]
rs59597619	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60459182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66924184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72638559	0.80[EUR][1000 genomes]
rs72638565	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62578800-62602000	Weak transcription	Aorta	Aorta
2	chr4:62579000-62580600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:62579400-62606800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr4:62579600-62580600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr4:62579600-62580600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr4:62579600-62580600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr4:62579600-62580600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:62580000-62587000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:62580200-62586400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr4:62580400-62586400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr4:62580400-62586400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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