Variant report

Variant	rs59597619
Chromosome Location	chr4:62590609-62590610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs58369539	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60459182	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66924184	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72638559	0.82[EUR][1000 genomes]
rs72638565	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62578800-62602000	Weak transcription	Aorta	Aorta
2	chr4:62579400-62606800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr4:62587600-62598600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:62589800-62599000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr4:62590000-62590800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr4:62590000-62601000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr4:62590200-62599400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:62590200-62600400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:62590400-62600400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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