Variant report

Variant	rs72638565
Chromosome Location	chr4:62597275-62597276
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs58369539	0.80[EUR][1000 genomes]
rs59597619	0.82[EUR][1000 genomes]
rs60459182	0.80[EUR][1000 genomes]
rs66924184	0.80[EUR][1000 genomes]
rs72638559	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62578800-62602000	Weak transcription	Aorta	Aorta
2	chr4:62579400-62606800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr4:62587600-62598600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:62589800-62599000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr4:62590000-62601000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr4:62590200-62599400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr4:62590200-62600400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:62590400-62600400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr4:62590800-62606400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr4:62593600-62606000	Weak transcription	Brain Anterior Caudate	brain
11	chr4:62594600-62609400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:62596400-62606400	Weak transcription	Fetal Kidney	kidney
13	chr4:62596600-62597600	Enhancers	Liver	Liver
14	chr4:62596800-62598800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr4:62597000-62598400	Weak transcription	Fetal Muscle Leg	muscle
16	chr4:62597000-62598600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr4:62597000-62598600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr4:62597000-62606400	Weak transcription	Brain Substantia Nigra	brain
19	chr4:62597200-62599000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr4:62597200-62606000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr4:62597200-62606400	Weak transcription	Fetal Heart	heart
22	chr4:62597200-62609400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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