Variant report

Variant	rs6554218
Chromosome Location	chr4:55831694-55831695
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10023184	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12511939	0.86[ASN][1000 genomes]
rs4262039	0.91[ASN][1000 genomes]
rs4282248	0.81[CHB][hapmap];0.88[CHD][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs4342247	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4450992	0.87[ASN][1000 genomes]
rs4645274	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62306405	0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6554217	0.87[ASN][1000 genomes]
rs6554224	0.86[ASN][1000 genomes]
rs6818867	0.90[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7671214	0.94[ASN][1000 genomes]
rs7688588	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7698851	0.94[ASN][1000 genomes]
rs9312654	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv948758	chr4:55748430-55887962	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6554218	HOPX	cis	parietal	SCAN
rs6554218	KIT	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55817800-55836800	Weak transcription	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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