Variant report

Variant	rs7698851
Chromosome Location	chr4:55826714-55826715
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10023184	0.91[ASN][1000 genomes]
rs12511939	0.81[ASN][1000 genomes]
rs4262039	0.86[ASN][1000 genomes]
rs4342247	0.93[ASN][1000 genomes]
rs4450992	0.82[ASN][1000 genomes]
rs4645274	0.86[ASN][1000 genomes]
rs62306405	0.93[ASN][1000 genomes]
rs6554217	0.82[ASN][1000 genomes]
rs6554218	0.94[ASN][1000 genomes]
rs6554224	0.81[ASN][1000 genomes]
rs6818867	0.82[ASN][1000 genomes]
rs7671214	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7688588	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv948758	chr4:55748430-55887962	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55817800-55836800	Weak transcription	Psoas Muscle	Psoas
2	chr4:55823800-55827800	Enhancers	Primary T cells from cord blood	blood
3	chr4:55824200-55827200	Enhancers	NH-A	brain
4	chr4:55824200-55827600	Enhancers	NHLF	lung
5	chr4:55824200-55828000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:55824400-55827600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:55824600-55827000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:55824600-55827200	Enhancers	HSMM	muscle
9	chr4:55824800-55826800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr4:55824800-55827000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr4:55825000-55827000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr4:55825000-55827000	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr4:55825000-55827800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr4:55825400-55827000	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr4:55826200-55827200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr4:55826200-55827800	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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