Variant report

Variant	rs655672
Chromosome Location	chr1:57779513-57779514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10493216	1.00[CHB][hapmap]
rs11805025	1.00[CHD][hapmap]
rs166552	1.00[CHD][hapmap]
rs17115713	1.00[CHD][hapmap]
rs17422855	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs17424278	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs17424691	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs17456794	1.00[CHB][hapmap]
rs17456828	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs17456884	1.00[CHB][hapmap]
rs267644	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs41324751	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs545796	1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs561221	1.00[CHB][hapmap]
rs6693181	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7539971	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs655672	YIPF1	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57773200-57790200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:57775600-57779800	Enhancers	Fetal Intestine Large	intestine
3	chr1:57775600-57779800	Enhancers	Fetal Intestine Small	intestine
4	chr1:57776600-57790200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:57778400-57779600	Enhancers	Fetal Brain Female	brain
6	chr1:57778400-57780400	Enhancers	Fetal Brain Male	brain
7	chr1:57778600-57779600	Weak transcription	Brain Angular Gyrus	brain
8	chr1:57779400-57779600	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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