Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10493216	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs11805025	0.91[GIH][hapmap]
rs1262815	0.86[EUR][1000 genomes]
rs17115713	0.91[GIH][hapmap]
rs17422855	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs17424237	0.83[ASN][1000 genomes]
rs17424278	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs17424691	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs17456794	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs17456828	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs17456884	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs17458265	0.83[ASN][1000 genomes]
rs267647	0.90[LWK][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes]
rs41324751	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs545796	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs56111567	0.83[ASN][1000 genomes]
rs561221	1.00[CHB][hapmap]
rs56168067	0.83[ASN][1000 genomes]
rs56221416	0.83[ASN][1000 genomes]
rs655672	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs6693181	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs72674849	0.83[ASN][1000 genomes]
rs72674850	0.83[ASN][1000 genomes]
rs72674851	0.83[ASN][1000 genomes]
rs72674853	0.83[ASN][1000 genomes]
rs72674856	0.83[ASN][1000 genomes]
rs7539971	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv871943	chr1:57784144-57855876	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57785200-57793800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:57787200-57793800	Weak transcription	Fetal Brain Male	brain
3	chr1:57789800-57792400	Enhancers	Fetal Intestine Small	intestine
4	chr1:57789800-57792600	Enhancers	Fetal Intestine Large	intestine
5	chr1:57790000-57790800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:57790000-57790800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr1:57790200-57790600	Enhancers	H1 Cell Line	embryonic stem cell
8	chr1:57790200-57790800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:57790200-57791000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr1:57790200-57791200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr1:57790200-57792400	Enhancers	Duodenum Mucosa	Duodenum
12	chr1:57790400-57790600	Enhancers	Fetal Brain Female	brain
13	chr1:57790400-57791000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr1:57790400-57791200	Enhancers	Left Ventricle	heart
15	chr1:57790400-57791200	Enhancers	Right Ventricle	heart
16	chr1:57790400-57791200	Flanking Active TSS	Stomach Smooth Muscle	stomach
17	chr1:57790400-57791800	Enhancers	Liver	Liver
18	chr1:57790400-57792000	Enhancers	HepG2	liver
19	chr1:57790400-57792400	Enhancers	Rectal Smooth Muscle	rectum
20	chr1:57790400-57793400	Enhancers	Colon Smooth Muscle	Colon

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