Variant report

Variant	rs6556852
Chromosome Location	chr5:94083237-94083238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17083994	0.82[CHB][hapmap]
rs4869219	0.95[CHB][hapmap];0.80[CHD][hapmap];0.81[ASN][1000 genomes]
rs4869220	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs6877744	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94072600-94086200	Weak transcription	Spleen	Spleen
2	chr5:94074200-94127600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:94080200-94083600	Weak transcription	Thymus	Thymus
4	chr5:94080800-94085000	Enhancers	Hela-S3	cervix
5	chr5:94081400-94083400	Weak transcription	Fetal Thymus	thymus
6	chr5:94081800-94083800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:94081800-94084800	Enhancers	Primary hematopoietic stem cells	blood
8	chr5:94081800-94085200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr5:94082200-94084800	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr5:94082400-94086200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:94082600-94085000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr5:94082800-94086400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:94083000-94084000	Weak transcription	Primary B cells from peripheral blood	blood
14	chr5:94083000-94084600	Enhancers	GM12878-XiMat	blood
15	chr5:94083000-94088000	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr5:94083000-94108000	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr5:94083000-94125800	Weak transcription	HUVEC	blood vessel
18	chr5:94083200-94083600	Weak transcription	Primary B cells from cord blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links