Variant report

Variant	rs17083994
Chromosome Location	chr5:94082049-94082050
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11741678	0.80[YRI][hapmap]
rs11960858	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs306581	0.80[YRI][hapmap]
rs4869219	0.96[CEU][hapmap];0.86[CHB][hapmap];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4869220	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6556852	0.82[CHB][hapmap]
rs6877744	0.83[CHB][hapmap]
rs7700629	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7707464	0.82[CEU][hapmap]
rs845725	0.92[CEU][hapmap];0.83[EUR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94072600-94086200	Weak transcription	Spleen	Spleen
2	chr5:94074200-94127600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:94080200-94083600	Weak transcription	Thymus	Thymus
4	chr5:94080800-94082200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr5:94080800-94083000	Enhancers	Primary B cells from peripheral blood	blood
6	chr5:94080800-94085000	Enhancers	Hela-S3	cervix
7	chr5:94081200-94082400	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr5:94081400-94082400	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr5:94081400-94082800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:94081400-94083000	Enhancers	HUVEC	blood vessel
11	chr5:94081400-94083400	Weak transcription	Fetal Thymus	thymus
12	chr5:94081600-94082800	Enhancers	NH-A	brain
13	chr5:94081600-94083000	Flanking Active TSS	GM12878-XiMat	blood
14	chr5:94081800-94082600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr5:94081800-94082800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr5:94081800-94083200	Enhancers	Primary B cells from cord blood	blood
17	chr5:94081800-94083800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr5:94081800-94084800	Enhancers	Primary hematopoietic stem cells	blood
19	chr5:94081800-94085200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr5:94082000-94082200	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr5:94082000-94082800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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