Variant report

Variant	rs7700629
Chromosome Location	chr5:94067063-94067064
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10043446	0.83[ASN][1000 genomes]
rs11135412	0.95[ASN][1000 genomes]
rs11960858	0.81[AMR][1000 genomes]
rs17083994	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17084010	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4869219	0.87[CEU][hapmap]
rs4869220	0.88[CEU][hapmap];0.81[AMR][1000 genomes]
rs72773594	0.97[ASN][1000 genomes]
rs72773595	0.97[ASN][1000 genomes]
rs72773598	0.97[ASN][1000 genomes]
rs72773601	0.96[ASN][1000 genomes]
rs72773602	0.97[ASN][1000 genomes]
rs7707464	0.91[CEU][hapmap]
rs845725	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs9314118	0.92[CHB][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882387	chr5:94001476-94071404	Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94048600-94071600	Weak transcription	Lung	lung
2	chr5:94048600-94081400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:94049400-94081400	Weak transcription	HUVEC	blood vessel
4	chr5:94049800-94077600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr5:94050600-94069000	Weak transcription	Hela-S3	cervix
6	chr5:94051000-94067800	Weak transcription	Fetal Thymus	thymus
7	chr5:94052400-94079600	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr5:94066000-94067200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr5:94067000-94070600	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr5:94067000-94080600	Weak transcription	Primary monocytes fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links