Variant report

Variant	rs6556870
Chromosome Location	chr5:94777001-94777002
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10053324	0.94[ASN][1000 genomes]
rs10076499	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1183640	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1541798	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1981952	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2245588	0.85[ASN][1000 genomes]
rs2255165	0.89[ASN][1000 genomes]
rs2545841	0.87[ASN][1000 genomes]
rs2548652	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2560257	0.80[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2560258	0.92[ASN][1000 genomes]
rs2560260	0.94[ASN][1000 genomes]
rs2560261	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2560274	0.85[ASN][1000 genomes]
rs2731825	0.84[ASN][1000 genomes]
rs2731826	0.80[ASN][1000 genomes]
rs2731833	0.80[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2881976	0.81[ASN][1000 genomes]
rs73777211	0.80[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9314148	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882388	chr5:94764006-94925849	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94776400-94781400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:94776600-94778000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr5:94776800-94778000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:94776800-94778000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr5:94776800-94781800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:94776800-94782000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr5:94777000-94777600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr5:94777000-94778200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr5:94777000-94781200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:94777000-94798600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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