Variant report

Variant	rs10053324
Chromosome Location	chr5:94819150-94819151
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94818513..94820922-chr5:94826927..94830240,3	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10076499	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1183640	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1541798	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1981952	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2245588	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2255165	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2545841	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2548652	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2560257	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2560258	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2560260	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2560261	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2560274	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2731825	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2731826	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2731833	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2881976	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61270217	0.82[ASN][1000 genomes]
rs6556870	0.94[ASN][1000 genomes]
rs73777211	0.96[ASN][1000 genomes]
rs9314148	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882388	chr5:94764006-94925849	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv598954	chr5:94783175-94859599	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94788800-94822000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:94792600-94821800	Weak transcription	Right Ventricle	heart
3	chr5:94795200-94826600	Weak transcription	NHEK	skin
4	chr5:94797000-94819200	Weak transcription	HepG2	liver
5	chr5:94799200-94821600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr5:94799200-94834800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:94802000-94821600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr5:94804600-94821600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr5:94804600-94823000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr5:94808000-94821600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr5:94808200-94821800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr5:94808200-94822800	Weak transcription	Psoas Muscle	Psoas
13	chr5:94809000-94823400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr5:94809800-94823000	Strong transcription	Primary B cells from peripheral blood	blood
15	chr5:94810200-94823000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:94810200-94823000	Strong transcription	Dnd41	blood
17	chr5:94810200-94823000	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr5:94810200-94823200	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr5:94810200-94827400	Strong transcription	Fetal Thymus	thymus
20	chr5:94810600-94823000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr5:94810600-94823000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr5:94810600-94823200	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr5:94810600-94827600	Strong transcription	Placenta	Placenta
24	chr5:94810800-94821200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr5:94810800-94821600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr5:94810800-94823200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr5:94810800-94823200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr5:94811000-94822200	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr5:94811000-94889400	Weak transcription	Stomach Mucosa	stomach
30	chr5:94811200-94823000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr5:94811200-94835600	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr5:94811800-94821600	Weak transcription	Brain Angular Gyrus	brain
33	chr5:94811800-94821600	Weak transcription	Esophagus	oesophagus
34	chr5:94811800-94822400	Weak transcription	Colonic Mucosa	Colon
35	chr5:94812000-94820000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr5:94812000-94820000	Weak transcription	Fetal Stomach	stomach
37	chr5:94812000-94820200	Weak transcription	Fetal Muscle Trunk	muscle
38	chr5:94812000-94821000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr5:94812000-94821400	Weak transcription	Pancreas	Pancrea
40	chr5:94812000-94821600	Weak transcription	Gastric	stomach
41	chr5:94812000-94821600	Weak transcription	Lung	lung
42	chr5:94812000-94821600	Weak transcription	Spleen	Spleen
43	chr5:94812000-94821800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr5:94812000-94821800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr5:94812200-94821600	Weak transcription	Fetal Intestine Small	intestine
46	chr5:94812400-94820000	Weak transcription	Colon Smooth Muscle	Colon
47	chr5:94812400-94835600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr5:94812600-94821000	Weak transcription	A549	lung
49	chr5:94813000-94820400	Weak transcription	Fetal Kidney	kidney
50	chr5:94813200-94821200	Strong transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links