Variant report

Variant	rs6561472
Chromosome Location	chr13:49222597-49222598
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10076	0.82[MEX][hapmap]
rs11840566	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17071994	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2026581	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2026582	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2209084	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3020646	0.82[MEX][hapmap]
rs4151590	0.82[MEX][hapmap]
rs57517713	0.83[ASN][1000 genomes]
rs57542351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60631683	0.83[ASN][1000 genomes]
rs7332631	0.82[MEX][hapmap]
rs7339332	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74074980	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74074988	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74075000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7985015	0.92[ASN][1000 genomes]
rs7997045	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8001963	0.90[ASN][1000 genomes]
rs9285169	0.95[ASN][1000 genomes]
rs9316392	0.82[MEX][hapmap]
rs9332025	0.82[MEX][hapmap]
rs9332053	0.82[MEX][hapmap]
rs9332066	0.82[MEX][hapmap]
rs9591171	0.82[MEX][hapmap]
rs9591186	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9591188	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9595938	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9595940	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9595941	0.92[AMR][1000 genomes]
rs9595942	0.92[AMR][1000 genomes]
rs9595947	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9595952	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9595955	0.96[ASN][1000 genomes]
rs9595958	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041275	chr13:49045566-49242357	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv541769	chr13:49045566-49242357	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv832604	chr13:49061081-49281807	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	nsv832605	chr13:49171305-49344970	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49220200-49222600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:49221400-49226200	Weak transcription	Dnd41	blood
3	chr13:49221600-49223000	Enhancers	Adipose Nuclei	Adipose
4	chr13:49221800-49222600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:49222000-49225200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr13:49222200-49223000	Enhancers	Fetal Stomach	stomach
7	chr13:49222200-49223200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr13:49222400-49222600	Bivalent Enhancer	HepG2	liver
9	chr13:49222400-49223000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr13:49222400-49223400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr13:49222400-49224800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr13:49222400-49224800	Enhancers	Monocytes-CD14+_RO01746	blood

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