Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11840566	0.95[ASN][1000 genomes]
rs17071994	0.93[ASN][1000 genomes]
rs2026581	0.93[ASN][1000 genomes]
rs2026582	0.93[ASN][1000 genomes]
rs2209084	0.93[ASN][1000 genomes]
rs57517713	0.80[ASN][1000 genomes]
rs57542351	0.95[ASN][1000 genomes]
rs60631683	0.80[ASN][1000 genomes]
rs6561472	0.95[ASN][1000 genomes]
rs7339332	0.95[ASN][1000 genomes]
rs74074980	0.93[ASN][1000 genomes]
rs74074988	0.95[ASN][1000 genomes]
rs74075000	0.91[ASN][1000 genomes]
rs7985015	0.87[ASN][1000 genomes]
rs7997045	0.93[ASN][1000 genomes]
rs8001963	0.93[ASN][1000 genomes]
rs9591186	0.93[ASN][1000 genomes]
rs9591188	0.93[ASN][1000 genomes]
rs9595938	0.93[ASN][1000 genomes]
rs9595940	0.93[ASN][1000 genomes]
rs9595947	0.93[ASN][1000 genomes]
rs9595952	0.96[ASN][1000 genomes]
rs9595955	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9595958	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832604	chr13:49061081-49281807	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv832605	chr13:49171305-49344970	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49248200-49252800	Enhancers	Dnd41	blood
2	chr13:49250200-49251800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr13:49250400-49251200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr13:49250800-49251800	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr13:49250800-49252200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr13:49251000-49251600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr13:49251000-49251800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr13:49251000-49251800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr13:49251000-49257200	Enhancers	Primary monocytes fromperipheralblood	blood

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