Variant report

Variant	rs6561766
Chromosome Location	chr13:54691484-54691485
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10467530	0.80[AMR][1000 genomes]
rs1335979	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1335980	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1932502	0.84[ASN][1000 genomes]
rs1932503	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2005372	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2050534	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2050535	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2050536	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2152503	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2184678	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2261357	1.00[JPT][hapmap]
rs2261359	1.00[JPT][hapmap]
rs2261365	1.00[JPT][hapmap]
rs2408992	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2408993	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2408994	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2408995	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2576125	0.81[AMR][1000 genomes]
rs2576128	0.81[AMR][1000 genomes]
rs2576129	0.81[AMR][1000 genomes]
rs2576135	0.84[AMR][1000 genomes]
rs2784552	1.00[JPT][hapmap]
rs2784559	0.81[AMR][1000 genomes]
rs2784560	0.81[AMR][1000 genomes]
rs2784564	0.81[AMR][1000 genomes]
rs4883848	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4883850	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4884867	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs5002542	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs5002543	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7326186	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7326388	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7335475	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7984593	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7985320	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7986212	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7991755	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs8001182	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs878943	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9536637	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9536639	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9596914	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs988526	0.87[ASN][1000 genomes]
rs988528	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3375545	chr13:54517432-54908108	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1049	chr13:54684354-54728981	Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54678000-54692000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr13:54683200-54698800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr13:54688600-54692200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr13:54688600-54699000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:54689000-54706000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr13:54689400-54700000	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr13:54691000-54692000	Weak transcription	H9 Cell Line	embryonic stem cell

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