Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1335980	0.80[ASN][1000 genomes]
rs1932502	0.93[ASN][1000 genomes]
rs2261357	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2261359	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2261365	0.94[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2261530	0.87[ASN][1000 genomes]
rs2261534	0.86[ASN][1000 genomes]
rs2408992	0.80[ASN][1000 genomes]
rs2408994	0.82[AMR][1000 genomes]
rs2784547	0.86[ASN][1000 genomes]
rs2784548	0.87[ASN][1000 genomes]
rs2784549	0.87[ASN][1000 genomes]
rs2784550	0.87[ASN][1000 genomes]
rs2784551	0.87[ASN][1000 genomes]
rs2784552	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2784553	0.87[ASN][1000 genomes]
rs2784554	0.87[ASN][1000 genomes]
rs2784566	0.90[GIH][hapmap]
rs2784568	0.90[GIH][hapmap]
rs6561766	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs8001182	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9596914	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3375545	chr13:54517432-54908108	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1049	chr13:54684354-54728981	Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54678000-54692000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr13:54683200-54698800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr13:54688600-54692200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr13:54688600-54699000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:54689000-54706000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr13:54689400-54700000	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr13:54691000-54692000	Weak transcription	H9 Cell Line	embryonic stem cell

Quick Search: