Variant report

Variant	rs6562129
Chromosome Location	chr13:61304746-61304747
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10162120	0.80[ASN][1000 genomes]
rs1028071	0.80[AMR][1000 genomes]
rs2184070	0.83[AMR][1000 genomes]
rs3119884	0.81[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap]
rs7326671	0.88[ASN][1000 genomes]
rs7326763	0.88[ASN][1000 genomes]
rs9317133	0.86[ASN][1000 genomes]
rs9317135	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9538890	0.88[ASN][1000 genomes]
rs9538893	0.83[ASN][1000 genomes]
rs9570350	0.83[ASN][1000 genomes]
rs9598169	0.86[CHB][hapmap];0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817223	chr13:60623429-61453435	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv900241	chr13:61217896-61368021	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832623	chr13:61303818-61468576	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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