Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10162120	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1028071	0.94[ASN][1000 genomes]
rs11838990	0.82[AMR][1000 genomes]
rs2184070	0.94[ASN][1000 genomes]
rs3106556	0.92[ASN][1000 genomes]
rs3119880	0.92[ASN][1000 genomes]
rs3119884	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs3127027	0.92[ASN][1000 genomes]
rs3967110	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4886268	0.82[AMR][1000 genomes]
rs4886269	0.85[AMR][1000 genomes]
rs4886275	0.83[AMR][1000 genomes]
rs6562129	0.83[ASN][1000 genomes]
rs73219646	0.85[ASN][1000 genomes]
rs7326763	0.80[EUR][1000 genomes]
rs9285228	0.83[AMR][1000 genomes]
rs9317135	0.95[ASN][1000 genomes]
rs9317136	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9317137	0.81[AMR][1000 genomes]
rs9528218	0.83[AMR][1000 genomes]
rs9528220	0.83[AMR][1000 genomes]
rs9538890	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9538893	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9538903	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9538904	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9538922	0.82[AMR][1000 genomes]
rs9598169	0.90[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817223	chr13:60623429-61453435	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv900241	chr13:61217896-61368021	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832623	chr13:61303818-61468576	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61313600-61314000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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