Variant report

Variant	rs9538904
Chromosome Location	chr13:61325311-61325312
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10162120	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1028071	0.95[ASN][1000 genomes]
rs11838990	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1399140	0.83[ASN][1000 genomes]
rs1399141	0.83[ASN][1000 genomes]
rs1399142	0.83[ASN][1000 genomes]
rs1514158	0.83[ASN][1000 genomes]
rs1514168	0.82[ASN][1000 genomes]
rs1855191	0.83[ASN][1000 genomes]
rs1999517	0.82[ASN][1000 genomes]
rs2090087	0.82[ASN][1000 genomes]
rs2184070	0.95[ASN][1000 genomes]
rs2203366	0.83[ASN][1000 genomes]
rs3106554	0.82[ASN][1000 genomes]
rs3106555	0.83[ASN][1000 genomes]
rs3106556	0.97[ASN][1000 genomes]
rs3119864	0.83[ASN][1000 genomes]
rs3119879	0.83[ASN][1000 genomes]
rs3119880	0.96[ASN][1000 genomes]
rs3119882	0.82[ASN][1000 genomes]
rs3119883	0.82[ASN][1000 genomes]
rs3119884	0.82[ASN][1000 genomes]
rs3120232	0.83[ASN][1000 genomes]
rs3127026	0.81[ASN][1000 genomes]
rs3127027	0.97[ASN][1000 genomes]
rs3127029	0.82[ASN][1000 genomes]
rs3127030	0.82[ASN][1000 genomes]
rs3967110	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4886268	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4886269	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4886275	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73219646	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9285228	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9317135	0.92[ASN][1000 genomes]
rs9317136	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9317137	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9528218	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9528220	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9538893	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9538903	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9538922	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9570350	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9598169	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817223	chr13:60623429-61453435	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv900241	chr13:61217896-61368021	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832623	chr13:61303818-61468576	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1037954	chr13:61319533-61395907	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61314600-61327800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:61322400-61328400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:61323800-61326000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr13:61324800-61325800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links