Variant report

Variant	rs1514158
Chromosome Location	chr13:61329369-61329370
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:61329166..61329692-chr13:62259510..62260157,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10162120	0.82[ASN][1000 genomes]
rs1028071	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11838990	0.97[ASN][1000 genomes]
rs1355906	0.81[CEU][hapmap]
rs1399140	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1399141	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1399142	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1514168	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1855191	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1999517	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2090087	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2184070	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2203366	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3106554	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3106555	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3106556	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3119864	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3119879	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3119880	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3119882	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3119883	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3119884	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3120232	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3127026	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3127027	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3127029	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3127030	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3127033	0.83[EUR][1000 genomes]
rs3127037	0.83[EUR][1000 genomes]
rs3967110	0.84[ASN][1000 genomes]
rs4886268	1.00[ASN][1000 genomes]
rs4886269	0.99[ASN][1000 genomes]
rs4886275	0.97[ASN][1000 genomes]
rs73219646	0.91[ASN][1000 genomes]
rs925641	0.83[EUR][1000 genomes]
rs9285228	0.98[ASN][1000 genomes]
rs9317135	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9317136	0.83[ASN][1000 genomes]
rs9317137	0.99[ASN][1000 genomes]
rs9528218	0.98[ASN][1000 genomes]
rs9528220	0.97[ASN][1000 genomes]
rs9538903	0.84[ASN][1000 genomes]
rs9538904	0.83[ASN][1000 genomes]
rs9538922	0.98[ASN][1000 genomes]
rs9598169	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817223	chr13:60623429-61453435	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv900241	chr13:61217896-61368021	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832623	chr13:61303818-61468576	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1037954	chr13:61319533-61395907	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv561866	chr13:61328813-61388794	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61326000-61330200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:61326200-61330400	Weak transcription	Fetal Brain Female	brain
3	chr13:61327800-61331600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:61328000-61330800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr13:61328000-61330800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr13:61328000-61331000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr13:61328200-61329400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr13:61328200-61330800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr13:61328200-61334400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr13:61328400-61330600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr13:61328400-61330600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr13:61328400-61330800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr13:61328400-61331000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr13:61328600-61329600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr13:61328600-61329800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr13:61328600-61330400	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr13:61328800-61329400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr13:61328800-61329600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr13:61328800-61330000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr13:61329000-61329400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr13:61329000-61329400	Enhancers	Brain Germinal Matrix	brain
22	chr13:61329000-61330000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr13:61329000-61330800	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr13:61329000-61333600	Weak transcription	Primary hematopoietic stem cells	blood
25	chr13:61329000-61334000	Enhancers	Fetal Brain Male	brain
26	chr13:61329200-61329800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr13:61329200-61330600	Enhancers	Fetal Heart	heart
28	chr13:61329200-61331200	Enhancers	Gastric	stomach

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