Variant report
Variant | rs925641 |
---|---|
Chromosome Location | chr13:61384766-61384767 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1355906 | 0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.92[YRI][hapmap] |
rs1399140 | 0.85[EUR][1000 genomes] |
rs1399141 | 0.85[EUR][1000 genomes] |
rs1399142 | 0.85[EUR][1000 genomes] |
rs1399150 | 0.96[ASN][1000 genomes] |
rs1399152 | 0.99[ASN][1000 genomes] |
rs1514158 | 0.83[EUR][1000 genomes] |
rs1514168 | 0.85[EUR][1000 genomes] |
rs1855191 | 0.83[EUR][1000 genomes] |
rs1999517 | 0.85[EUR][1000 genomes] |
rs2090087 | 0.83[EUR][1000 genomes] |
rs2203366 | 0.83[EUR][1000 genomes] |
rs3106554 | 0.83[EUR][1000 genomes] |
rs3106555 | 0.83[EUR][1000 genomes] |
rs3119864 | 0.81[EUR][1000 genomes] |
rs3119879 | 0.83[EUR][1000 genomes] |
rs3119882 | 0.84[EUR][1000 genomes] |
rs3119883 | 0.85[EUR][1000 genomes] |
rs3119884 | 0.88[CEU][hapmap];0.85[YRI][hapmap];0.85[EUR][1000 genomes] |
rs3120232 | 0.83[EUR][1000 genomes] |
rs3127026 | 0.83[EUR][1000 genomes] |
rs3127029 | 0.84[EUR][1000 genomes] |
rs3127030 | 0.85[EUR][1000 genomes] |
rs3127033 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs3127037 | 0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7989894 | 0.98[ASN][1000 genomes] |
rs9528231 | 0.95[CHB][hapmap];0.91[JPT][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv817223 | chr13:60623429-61453435 | Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 41 gene(s) | inside rSNPs | diseases |
2 | nsv832623 | chr13:61303818-61468576 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
3 | nsv1037954 | chr13:61319533-61395907 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
4 | nsv561866 | chr13:61328813-61388794 | Weak transcription Enhancers Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
5 | nsv832624 | chr13:61383648-61553974 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr13:61384400-61386200 | Weak transcription | Aorta | Aorta |
2 | chr13:61384400-61386400 | Enhancers | HUVEC | blood vessel |