Variant report

Variant	rs6563455
Chromosome Location	chr13:86319803-86319804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1337276	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1337278	0.84[ASN][1000 genomes]
rs1337279	0.84[ASN][1000 genomes]
rs1856108	0.84[ASN][1000 genomes]
rs1927740	0.88[ASN][1000 genomes]
rs2039654	0.83[ASN][1000 genomes]
rs4911019	0.85[ASN][1000 genomes]
rs4911020	0.85[ASN][1000 genomes]
rs61968693	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6563454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6563456	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6563457	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9531836	0.84[ASN][1000 genomes]
rs9547359	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9602817	0.84[ASN][1000 genomes]
rs9602818	0.84[ASN][1000 genomes]
rs9602819	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752724	chr13:85810499-86320999	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1037563	chr13:85830511-86414012	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv832668	chr13:86234885-86364254	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1044417	chr13:86239152-86344862	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv976270	chr13:86306573-86332392	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3404282	chr13:86317976-86320524	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
7	esv3339719	chr13:86318251-86320299	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86317800-86320000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr13:86319800-86320000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr13:86319800-86320600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr13:86319800-86320800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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