The 2.0 version of rSNPBase

Variant report

Variant rs6563738
Chromosome Location chr13:40239764-40239765
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:114 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:40230600-40252200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr13:40230600-40254600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr13:40230600-40254600 Weak transcription Lung lung
4 chr13:40230600-40254800 Weak transcription Aorta Aorta
5 chr13:40230600-40263800 Weak transcription Spleen Spleen
6 chr13:40230800-40239800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
7 chr13:40230800-40240000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
8 chr13:40230800-40246600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
9 chr13:40230800-40254600 Weak transcription Left Ventricle heart
10 chr13:40230800-40254600 Weak transcription Psoas Muscle Psoas
11 chr13:40230800-40254800 Weak transcription Fetal Thymus thymus
12 chr13:40230800-40256400 Weak transcription Placenta Amnion Placenta Amnion
13 chr13:40230800-40258400 Weak transcription Colonic Mucosa Colon
14 chr13:40230800-40262000 Weak transcription Thymus Thymus
15 chr13:40230800-40275000 Weak transcription Right Ventricle heart
16 chr13:40231000-40241600 Weak transcription Hela-S3 cervix
17 chr13:40231000-40243800 Weak transcription Fetal Heart heart
18 chr13:40231000-40252200 Weak transcription Brain Inferior Temporal Lobe brain
19 chr13:40231000-40252800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
20 chr13:40231000-40254400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
21 chr13:40231000-40254400 Weak transcription Stomach Smooth Muscle stomach
22 chr13:40231000-40254600 Weak transcription Primary hematopoietic stem cells short term culture blood
23 chr13:40231000-40254600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
24 chr13:40231000-40254600 Weak transcription NHLF lung
25 chr13:40231000-40256400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
26 chr13:40231000-40256400 Weak transcription NHEK skin
27 chr13:40231000-40257200 Weak transcription HMEC breast
28 chr13:40231000-40261800 Weak transcription Brain Substantia Nigra brain
29 chr13:40231000-40266200 Weak transcription Rectal Smooth Muscle rectum
30 chr13:40231000-40270800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
31 chr13:40231000-40286000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
32 chr13:40231200-40254400 Weak transcription Muscle Satellite Cultured Cells --
33 chr13:40231200-40254600 Weak transcription Skeletal Muscle Male skeletal muscle
34 chr13:40231200-40254800 Weak transcription Fetal Stomach stomach
35 chr13:40231400-40253600 Weak transcription Cortex derived primary cultured neurospheres brain
36 chr13:40231400-40254600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
37 chr13:40231400-40264200 Weak transcription Esophagus oesophagus
38 chr13:40231400-40268000 Weak transcription Small Intestine intestine
39 chr13:40231600-40239800 Weak transcription GM12878-XiMat blood
40 chr13:40231600-40254400 Weak transcription Fetal Brain Male brain
41 chr13:40231600-40270200 Weak transcription Gastric stomach
42 chr13:40231800-40252000 Weak transcription Brain Angular Gyrus brain
43 chr13:40232000-40239800 Weak transcription Brain Germinal Matrix brain
44 chr13:40232000-40251600 Weak transcription Brain Cingulate Gyrus brain
45 chr13:40232000-40252800 Weak transcription Primary T killer memory cells from peripheral blood blood
46 chr13:40232000-40253200 Weak transcription Primary T helper naive cells from peripheral blood blood
47 chr13:40232000-40254600 Weak transcription Pancreatic Islets Pancreatic Islet
48 chr13:40232200-40252000 Weak transcription Colon Smooth Muscle Colon
49 chr13:40233000-40243200 Weak transcription Ovary ovary
50 chr13:40233000-40254600 Weak transcription Primary T helper naive cells fromperipheralblood blood

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Last update: Aug 31, 2015