Variant report

Variant	rs6565215
Chromosome Location	chr16:31061626-31061627
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:31060004..31062838-chr16:31465158..31467286,2	MCF-7	breast:
2	chr16:31015069..31017104-chr16:31061235..31063220,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10153181	1.00[EUR][1000 genomes]
rs11150605	1.00[EUR][1000 genomes]
rs11649138	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11865829	1.00[EUR][1000 genomes]
rs1549300	1.00[EUR][1000 genomes]
rs17878338	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17878521	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17883591	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17886199	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2016554	0.82[AFR][1000 genomes]
rs2032917	1.00[ASW][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4435271	1.00[ASW][hapmap];1.00[EUR][1000 genomes]
rs4889515	1.00[EUR][1000 genomes]
rs4889529	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4889531	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4889532	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4889533	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4889535	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4889613	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4889615	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59645185	1.00[EUR][1000 genomes]
rs61745791	1.00[EUR][1000 genomes]
rs61747561	1.00[EUR][1000 genomes]
rs6420450	1.00[EUR][1000 genomes]
rs6565206	1.00[EUR][1000 genomes]
rs6565212	1.00[ASW][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap]
rs6565218	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7184697	1.00[ASW][hapmap];1.00[LWK][hapmap];0.88[YRI][hapmap];1.00[EUR][1000 genomes]
rs7194921	1.00[ASW][hapmap];1.00[EUR][1000 genomes]
rs7206294	1.00[EUR][1000 genomes]
rs7405418	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7499974	1.00[EUR][1000 genomes]
rs8045936	1.00[EUR][1000 genomes]
rs8056076	0.88[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8057433	1.00[EUR][1000 genomes]
rs889550	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs889553	1.00[ASW][hapmap];0.93[LWK][hapmap];0.88[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9924071	1.00[EUR][1000 genomes]
rs9925932	1.00[EUR][1000 genomes]
rs9926903	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062456	chr16:30442166-31253997	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
2	nsv542898	chr16:30442166-31253997	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
3	nsv1064134	chr16:30640293-31087327	Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	238 gene(s)	inside rSNPs	diseases
4	nsv905729	chr16:30642867-31247924	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	387 gene(s)	inside rSNPs	diseases
5	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
6	nsv905734	chr16:30877544-31191482	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
7	nsv905735	chr16:30890538-31247924	Strong transcription Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	264 gene(s)	inside rSNPs	diseases
8	nsv457483	chr16:30903679-31191482	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	253 gene(s)	inside rSNPs	diseases
9	nsv571820	chr16:30903679-31191482	Enhancers Genic enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	253 gene(s)	inside rSNPs	diseases
10	esv1797877	chr16:30948643-31188432	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
11	nsv833193	chr16:30960796-31133604	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
12	nsv916994	chr16:30971725-31078117	Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
13	nsv827614	chr16:31058322-31072059	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31046000-31071000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr16:31046000-31083200	Weak transcription	Right Atrium	heart
3	chr16:31046200-31063000	Weak transcription	Hela-S3	cervix
4	chr16:31046200-31063200	Weak transcription	HMEC	breast
5	chr16:31048200-31063200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr16:31048200-31063400	Weak transcription	K562	blood
7	chr16:31048200-31071400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr16:31049600-31075600	Weak transcription	Psoas Muscle	Psoas
9	chr16:31051000-31063200	Weak transcription	NH-A	brain
10	chr16:31051200-31071000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr16:31051400-31083000	Weak transcription	Fetal Lung	lung
12	chr16:31052000-31071800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr16:31052000-31083400	Weak transcription	Primary B cells from cord blood	blood
14	chr16:31052400-31074400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr16:31052600-31063600	Weak transcription	Small Intestine	intestine
16	chr16:31053800-31072000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr16:31054000-31063400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr16:31054000-31069200	Weak transcription	Fetal Brain Female	brain
19	chr16:31054000-31072600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr16:31054000-31083200	Weak transcription	Fetal Kidney	kidney
21	chr16:31054200-31071000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr16:31054200-31076200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr16:31054400-31071800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr16:31054400-31072000	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr16:31054600-31063200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr16:31054600-31063400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr16:31054600-31071600	Weak transcription	Dnd41	blood
28	chr16:31054600-31071800	Weak transcription	GM12878-XiMat	blood
29	chr16:31054600-31072000	Weak transcription	Esophagus	oesophagus
30	chr16:31054600-31072200	Weak transcription	Colonic Mucosa	Colon
31	chr16:31054800-31063200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr16:31054800-31063200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr16:31054800-31063200	Weak transcription	HSMMtube	muscle
34	chr16:31054800-31064600	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr16:31054800-31068800	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr16:31054800-31069000	Weak transcription	Thymus	Thymus
37	chr16:31054800-31069200	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr16:31054800-31071000	Weak transcription	Fetal Thymus	thymus
39	chr16:31054800-31071400	Weak transcription	Brain Hippocampus Middle	brain
40	chr16:31054800-31071600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr16:31054800-31071600	Weak transcription	Gastric	stomach
42	chr16:31054800-31071800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr16:31054800-31071800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr16:31054800-31071800	Weak transcription	Adipose Nuclei	Adipose
45	chr16:31054800-31071800	Weak transcription	Brain Germinal Matrix	brain
46	chr16:31054800-31072000	Weak transcription	Brain Anterior Caudate	brain
47	chr16:31054800-31072000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr16:31054800-31072000	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr16:31054800-31072200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr16:31054800-31072200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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