Variant report

Variant	rs6568586
Chromosome Location	chr6:109948910-109948911
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12200787	0.81[EUR][1000 genomes]
rs2357127	0.81[EUR][1000 genomes]
rs4946995	0.80[EUR][1000 genomes]
rs4946997	0.81[EUR][1000 genomes]
rs4946998	0.81[EUR][1000 genomes]
rs6568576	0.83[EUR][1000 genomes]
rs6568583	0.81[EUR][1000 genomes]
rs6921303	0.82[EUR][1000 genomes]
rs6931630	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6932774	0.81[EUR][1000 genomes]
rs9372220	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026012	chr6:109851638-109999379	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv604484	chr6:109851937-109997529	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1019389	chr6:109868058-109987502	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538416	chr6:109868058-109987502	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv917318	chr6:109885195-109982375	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv949475	chr6:109907936-110160501	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv933105	chr6:109933270-110064342	ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv817322	chr6:109933272-110070574	Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv830769	chr6:109944334-110078120	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6568586	C6orf199	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109923600-109952600	Weak transcription	Right Ventricle	heart
2	chr6:109928000-109966400	Weak transcription	Pancreas	Pancrea
3	chr6:109933000-109962800	Weak transcription	Left Ventricle	heart
4	chr6:109933000-109966400	Weak transcription	Brain Germinal Matrix	brain
5	chr6:109933000-109985200	Weak transcription	Psoas Muscle	Psoas
6	chr6:109933800-109951400	Weak transcription	Primary B cells from cord blood	blood
7	chr6:109945400-109966400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr6:109947200-109966800	Weak transcription	Gastric	stomach
9	chr6:109947400-109961200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:109947600-109949000	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr6:109948000-109952600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr6:109948000-109995000	Weak transcription	Brain Anterior Caudate	brain
13	chr6:109948800-109950200	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr6:109948800-109950800	Enhancers	Primary T cells from cord blood	blood
15	chr6:109948800-109950800	Enhancers	Fetal Thymus	thymus
16	chr6:109948800-109950800	Enhancers	Thymus	Thymus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links