Variant report

Variant	rs6932774
Chromosome Location	chr6:109937401-109937402
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109932824..109934658-chr6:109936171..109939061,2	K562	blood:

Extended variants
information (count: 189 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:178)

rs_ID	r²[population]
rs10457201	0.84[EUR][1000 genomes]
rs10872041	0.82[EUR][1000 genomes]
rs10872047	0.82[EUR][1000 genomes]
rs10872051	0.82[EUR][1000 genomes]
rs10872052	0.82[EUR][1000 genomes]
rs1096136	0.90[EUR][1000 genomes]
rs1096138	0.95[EUR][1000 genomes]
rs1096139	0.80[EUR][1000 genomes]
rs1096142	0.80[EUR][1000 genomes]
rs11153193	0.82[EUR][1000 genomes]
rs11153200	0.84[EUR][1000 genomes]
rs11153201	0.83[EUR][1000 genomes]
rs1115977	0.85[EUR][1000 genomes]
rs11753828	0.86[EUR][1000 genomes]
rs11754263	0.88[EUR][1000 genomes]
rs11966009	0.81[EUR][1000 genomes]
rs11968485	0.81[EUR][1000 genomes]
rs12200787	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12204769	0.84[EUR][1000 genomes]
rs12211805	0.80[EUR][1000 genomes]
rs12215867	0.84[EUR][1000 genomes]
rs12524352	0.85[EUR][1000 genomes]
rs1321327	0.84[EUR][1000 genomes]
rs1406957	0.83[EUR][1000 genomes]
rs1474959	0.85[EUR][1000 genomes]
rs1570011	0.83[EUR][1000 genomes]
rs1570012	0.84[EUR][1000 genomes]
rs1570013	0.84[EUR][1000 genomes]
rs1575109	0.84[EUR][1000 genomes]
rs17540056	0.86[EUR][1000 genomes]
rs1925921	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1967725	0.85[EUR][1000 genomes]
rs1969710	0.85[EUR][1000 genomes]
rs1969711	0.85[EUR][1000 genomes]
rs2016207	0.81[EUR][1000 genomes]
rs2064820	0.82[EUR][1000 genomes]
rs2064822	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2357123	0.82[EUR][1000 genomes]
rs2357125	0.84[EUR][1000 genomes]
rs2357127	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2357130	0.82[EUR][1000 genomes]
rs2884101	0.82[EUR][1000 genomes]
rs4296926	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4454170	0.82[EUR][1000 genomes]
rs4523125	0.85[EUR][1000 genomes]
rs4591898	0.81[EUR][1000 genomes]
rs4946982	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4946986	0.82[EUR][1000 genomes]
rs4946987	0.82[EUR][1000 genomes]
rs4946989	0.84[EUR][1000 genomes]
rs4946991	0.84[EUR][1000 genomes]
rs4946992	0.85[EUR][1000 genomes]
rs4946995	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4946996	0.83[EUR][1000 genomes]
rs4946997	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4946998	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4946999	0.82[EUR][1000 genomes]
rs4947003	0.81[EUR][1000 genomes]
rs4947004	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4947006	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56125306	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56264193	0.90[EUR][1000 genomes]
rs61170920	0.82[EUR][1000 genomes]
rs62437563	0.86[EUR][1000 genomes]
rs6568579	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6568582	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6568583	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6568586	0.81[EUR][1000 genomes]
rs6568590	0.81[EUR][1000 genomes]
rs6568591	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6568595	0.81[EUR][1000 genomes]
rs6568601	0.86[EUR][1000 genomes]
rs67715693	0.82[EUR][1000 genomes]
rs6900133	0.88[EUR][1000 genomes]
rs6900187	0.85[EUR][1000 genomes]
rs6911851	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6912368	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6917300	0.88[EUR][1000 genomes]
rs6921303	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6924436	0.88[EUR][1000 genomes]
rs6925886	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6929823	0.83[EUR][1000 genomes]
rs6931630	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6938741	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6942171	0.86[EUR][1000 genomes]
rs731879	0.81[EUR][1000 genomes]
rs7450970	0.81[EUR][1000 genomes]
rs7453835	0.85[EUR][1000 genomes]
rs7454678	0.85[EUR][1000 genomes]
rs7744981	0.82[EUR][1000 genomes]
rs7745469	0.82[EUR][1000 genomes]
rs7749386	0.85[EUR][1000 genomes]
rs7749910	0.82[EUR][1000 genomes]
rs7754118	0.85[EUR][1000 genomes]
rs7754606	0.85[EUR][1000 genomes]
rs7761008	0.83[EUR][1000 genomes]
rs7764783	0.81[EUR][1000 genomes]
rs7765265	0.82[EUR][1000 genomes]
rs7771729	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7772109	0.87[EUR][1000 genomes]
rs7773915	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7775420	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs829815	0.81[EUR][1000 genomes]
rs829816	0.81[EUR][1000 genomes]
rs829817	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs911022	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs911023	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9320290	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9320294	0.80[EUR][1000 genomes]
rs9320295	0.81[EUR][1000 genomes]
rs9320296	0.81[EUR][1000 genomes]
rs9320299	0.83[EUR][1000 genomes]
rs9320300	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9320304	0.85[EUR][1000 genomes]
rs9320305	0.85[EUR][1000 genomes]
rs9372216	0.83[EUR][1000 genomes]
rs9372220	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9372221	0.84[EUR][1000 genomes]
rs9372222	0.83[EUR][1000 genomes]
rs9374095	0.82[EUR][1000 genomes]
rs9374096	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9374097	0.82[EUR][1000 genomes]
rs9374099	0.82[EUR][1000 genomes]
rs9374108	0.85[EUR][1000 genomes]
rs9374113	0.81[EUR][1000 genomes]
rs9374114	0.81[EUR][1000 genomes]
rs9384713	0.82[EUR][1000 genomes]
rs9384715	0.83[EUR][1000 genomes]
rs9384716	0.84[EUR][1000 genomes]
rs9384720	0.81[EUR][1000 genomes]
rs9386812	0.82[EUR][1000 genomes]
rs9386813	0.82[EUR][1000 genomes]
rs9386814	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9386816	0.82[EUR][1000 genomes]
rs9386818	0.85[EUR][1000 genomes]
rs9386823	0.85[EUR][1000 genomes]
rs9386824	0.85[EUR][1000 genomes]
rs9386825	0.85[EUR][1000 genomes]
rs9386826	0.84[EUR][1000 genomes]
rs9398204	0.80[EUR][1000 genomes]
rs9398206	0.84[EUR][1000 genomes]
rs9400289	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9400291	0.82[EUR][1000 genomes]
rs9400294	0.82[EUR][1000 genomes]
rs9400295	0.82[EUR][1000 genomes]
rs9400300	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9400301	0.85[EUR][1000 genomes]
rs9400307	0.82[EUR][1000 genomes]
rs9400310	0.82[EUR][1000 genomes]
rs9400312	0.81[EUR][1000 genomes]
rs9400313	0.81[EUR][1000 genomes]
rs9400315	0.81[EUR][1000 genomes]
rs9400316	0.81[EUR][1000 genomes]
rs9480973	0.82[EUR][1000 genomes]
rs9480974	0.82[EUR][1000 genomes]
rs9480976	0.82[EUR][1000 genomes]
rs9480982	0.85[EUR][1000 genomes]
rs9480984	0.84[EUR][1000 genomes]
rs9480985	0.83[EUR][1000 genomes]
rs9480986	0.81[EUR][1000 genomes]
rs9480991	0.81[EUR][1000 genomes]
rs9487141	0.82[EUR][1000 genomes]
rs9487148	0.82[EUR][1000 genomes]
rs9487156	0.84[EUR][1000 genomes]
rs9487160	0.85[EUR][1000 genomes]
rs9487164	0.84[EUR][1000 genomes]
rs9487170	0.85[EUR][1000 genomes]
rs9487171	0.85[EUR][1000 genomes]
rs9487172	0.84[EUR][1000 genomes]
rs9487175	0.84[EUR][1000 genomes]
rs9487176	0.84[EUR][1000 genomes]
rs9487178	0.83[EUR][1000 genomes]
rs9487180	0.82[EUR][1000 genomes]
rs971432	0.81[EUR][1000 genomes]
rs971433	0.81[EUR][1000 genomes]
rs9968792	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9986423	0.81[EUR][1000 genomes]
rs9986507	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026012	chr6:109851638-109999379	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv604484	chr6:109851937-109997529	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1019389	chr6:109868058-109987502	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538416	chr6:109868058-109987502	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv917318	chr6:109885195-109982375	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv949475	chr6:109907936-110160501	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv933105	chr6:109933270-110064342	ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv817322	chr6:109933272-110070574	Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	esv3508500	chr6:109937209-109938087	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv3508501	chr6:109937209-109938087	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv3354249	chr6:109937232-109938099	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6932774	SMPD2	cis	Whole Blood	GTEx
rs6932774	C6orf199	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109923600-109952600	Weak transcription	Right Ventricle	heart
2	chr6:109928000-109966400	Weak transcription	Pancreas	Pancrea
3	chr6:109933000-109939400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:109933000-109948800	Weak transcription	Thymus	Thymus
5	chr6:109933000-109962800	Weak transcription	Left Ventricle	heart
6	chr6:109933000-109966400	Weak transcription	Brain Germinal Matrix	brain
7	chr6:109933000-109985200	Weak transcription	Psoas Muscle	Psoas
8	chr6:109933800-109951400	Weak transcription	Primary B cells from cord blood	blood

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