Variant report

Variant	rs7771729
Chromosome Location	chr6:109810870-109810871
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs1096136	0.85[EUR][1000 genomes]
rs1096138	0.89[EUR][1000 genomes]
rs11968485	0.83[TSI][hapmap]
rs12200787	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12215867	0.83[TSI][hapmap]
rs12524352	0.80[CEU][hapmap]
rs1358759	0.81[EUR][1000 genomes]
rs1406957	0.83[TSI][hapmap]
rs1407620	0.81[TSI][hapmap]
rs1474959	0.83[TSI][hapmap]
rs1590187	0.81[EUR][1000 genomes]
rs1925921	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1985123	0.81[EUR][1000 genomes]
rs1998812	0.80[EUR][1000 genomes]
rs2064822	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2145144	0.83[TSI][hapmap]
rs2357127	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2357128	0.81[TSI][hapmap]
rs4296926	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4523125	0.83[TSI][hapmap]
rs4946982	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4946992	0.83[TSI][hapmap]
rs4946995	0.88[EUR][1000 genomes]
rs4946997	0.89[EUR][1000 genomes]
rs4946998	0.89[EUR][1000 genomes]
rs4947004	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs4947006	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs56125306	0.84[EUR][1000 genomes]
rs56264193	0.84[EUR][1000 genomes]
rs6568576	0.80[EUR][1000 genomes]
rs6568578	1.00[CHB][hapmap]
rs6568579	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6568580	0.81[EUR][1000 genomes]
rs6568582	0.88[EUR][1000 genomes]
rs6568583	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6568591	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes]
rs6911851	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912368	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6916239	0.80[EUR][1000 genomes]
rs6921303	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs6925886	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6931630	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6932774	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6938741	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7450970	0.83[TSI][hapmap]
rs7744981	0.83[TSI][hapmap]
rs7745469	0.83[TSI][hapmap]
rs7749910	0.83[TSI][hapmap]
rs7769789	1.00[CHB][hapmap]
rs7772109	0.82[EUR][1000 genomes]
rs7773915	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7775420	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs829816	0.83[TSI][hapmap]
rs829817	0.89[EUR][1000 genomes]
rs911022	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes]
rs911023	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs9320290	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9320300	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9320303	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs9372220	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs9374092	0.81[EUR][1000 genomes]
rs9374096	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9374097	0.83[TSI][hapmap]
rs9384717	0.81[TSI][hapmap]
rs9386813	0.83[TSI][hapmap]
rs9386814	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9386823	0.82[CEU][hapmap]
rs9386824	0.83[TSI][hapmap]
rs9400289	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9400300	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9400310	0.82[TSI][hapmap]
rs9400316	0.83[TSI][hapmap]
rs942924	0.80[EUR][1000 genomes]
rs9480984	0.83[TSI][hapmap]
rs9480991	0.83[TSI][hapmap]
rs9487172	0.83[TSI][hapmap]
rs9487176	0.83[TSI][hapmap]
rs9968792	0.86[EUR][1000 genomes]
rs9986507	0.83[TSI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7771729	C6orf199	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109804400-109814200	Weak transcription	Gastric	stomach
2	chr6:109805000-109817000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:109805400-109812000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:109805600-109812400	Weak transcription	Brain Angular Gyrus	brain
5	chr6:109806000-109811400	Weak transcription	Dnd41	blood
6	chr6:109806200-109812200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:109806800-109812200	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:109807400-109812800	Weak transcription	Placenta	Placenta
9	chr6:109809600-109812600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:109809800-109811600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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