Variant report
| Variant | rs6569534 |
|---|---|
| Chromosome Location | chr6:128871626-128871627 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:128718526..128720512-chr6:128870478..128872777,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000152894 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs1281245 | 1.00[CEU][hapmap] |
| rs1281246 | 1.00[CEU][hapmap] |
| rs1341586 | 1.00[EUR][1000 genomes] |
| rs17055961 | 1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes] |
| rs17055964 | 1.00[EUR][1000 genomes] |
| rs17055978 | 1.00[EUR][1000 genomes] |
| rs17055990 | 1.00[EUR][1000 genomes] |
| rs17056023 | 1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs17056041 | 1.00[EUR][1000 genomes] |
| rs17056045 | 1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs17056084 | 1.00[EUR][1000 genomes] |
| rs17056088 | 1.00[EUR][1000 genomes] |
| rs17056165 | 1.00[CEU][hapmap] |
| rs59615501 | 1.00[EUR][1000 genomes] |
| rs6569531 | 1.00[ASW][hapmap] |
| rs73591395 | 1.00[EUR][1000 genomes] |
| rs73772055 | 1.00[EUR][1000 genomes] |
| rs73772058 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1033443 | chr6:128306654-128899203 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv538440 | chr6:128306654-128899203 | Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv1020071 | chr6:128579774-129048919 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| 4 | nsv538441 | chr6:128579774-129048919 | Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| 5 | nsv830800 | chr6:128710631-128878435 | Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
