Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:128839626..128841774-chr6:129051406..129053411,2	MCF-7	breast:
2	chr6:128839207..128843653-chr6:129048714..129054642,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152894	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1281245	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1616008	0.88[AFR][1000 genomes]
rs1703013	0.84[AFR][1000 genomes]
rs17055961	1.00[CEU][hapmap]
rs17056023	1.00[CEU][hapmap]
rs17056045	1.00[CEU][hapmap]
rs17056165	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17056171	0.97[EUR][1000 genomes]
rs526895	0.86[AFR][1000 genomes]
rs558773	0.88[AFR][1000 genomes]
rs564155	0.88[AFR][1000 genomes]
rs56830254	1.00[EUR][1000 genomes]
rs57757547	0.81[EUR][1000 genomes]
rs6569534	1.00[CEU][hapmap]
rs699428	0.88[AFR][1000 genomes]
rs699441	1.00[EUR][1000 genomes]
rs699442	0.86[AFR][1000 genomes]
rs73772070	1.00[EUR][1000 genomes]
rs73772074	1.00[EUR][1000 genomes]
rs73772352	1.00[EUR][1000 genomes]
rs774285	0.88[AFR][1000 genomes]
rs774286	1.00[EUR][1000 genomes]
rs774287	0.91[AFR][1000 genomes]
rs774288	1.00[EUR][1000 genomes]
rs9321134	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830801	chr6:128878436-129064667	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1030330	chr6:129008538-129095108	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:129045200-129062000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:129046600-129058000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:129046800-129058000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:129047200-129052600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:129047200-129052600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:129047200-129052600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:129047200-129055600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:129047200-129056000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:129047200-129056200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr6:129050400-129052600	Weak transcription	Ovary	ovary

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