Variant report

Variant	rs774287
Chromosome Location	chr6:129054569-129054570
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1281245	0.91[AFR][1000 genomes]
rs1281246	0.91[AFR][1000 genomes]
rs1616008	0.98[AFR][1000 genomes]
rs1703013	0.93[AFR][1000 genomes]
rs526895	0.95[AFR][1000 genomes]
rs558773	0.97[AFR][1000 genomes]
rs564155	0.97[AFR][1000 genomes]
rs699428	0.97[AFR][1000 genomes]
rs699442	0.95[AFR][1000 genomes]
rs774285	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830801	chr6:128878436-129064667	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1030330	chr6:129008538-129095108	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:129045200-129062000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:129046600-129058000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:129046800-129058000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:129047200-129055600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:129047200-129056000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr6:129047200-129056200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:129052800-129058200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:129053000-129055000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:129053000-129056000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:129053000-129058000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:129054400-129054600	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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