Variant report

Variant	rs57757547
Chromosome Location	chr6:129070344-129070345
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1281245	0.81[EUR][1000 genomes]
rs1281246	0.81[EUR][1000 genomes]
rs17056165	0.81[EUR][1000 genomes]
rs2136076	0.95[AFR][1000 genomes]
rs56830254	0.81[EUR][1000 genomes]
rs57862774	0.95[AFR][1000 genomes]
rs699441	0.81[EUR][1000 genomes]
rs73772070	0.81[EUR][1000 genomes]
rs73772074	0.81[EUR][1000 genomes]
rs73772352	0.81[EUR][1000 genomes]
rs774286	0.81[EUR][1000 genomes]
rs774288	0.81[EUR][1000 genomes]
rs9321134	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030330	chr6:129008538-129095108	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:129064400-129089200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:129068600-129071000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:129068600-129071600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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