Variant report

Variant	rs6569879
Chromosome Location	chr6:133678974-133678975
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1336529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1414982	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs211609	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs211628	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs212818	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs212831	0.81[CEU][hapmap];1.00[YRI][hapmap]
rs7743259	0.81[CEU][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6569879	EYA4	cis	intralobular white matter	BrainEAC

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133662200-133679200	Weak transcription	Psoas Muscle	Psoas
2	chr6:133668000-133679200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:133673600-133687600	Weak transcription	Hela-S3	cervix
4	chr6:133674000-133689800	Weak transcription	A549	lung
5	chr6:133674600-133679800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr6:133678600-133679000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr6:133678600-133679800	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr6:133678600-133680600	Enhancers	Fetal Kidney	kidney
9	chr6:133678800-133681000	Enhancers	Skeletal Muscle Female	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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