Variant report

Variant	rs7743259
Chromosome Location	chr6:133680637-133680638
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1336529	0.81[CEU][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1414982	0.81[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs211609	0.81[CEU][hapmap];0.92[MEX][hapmap];0.84[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs211628	0.81[CEU][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs212818	0.81[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs212831	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap]
rs6569879	0.81[CEU][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7743259	ENPP1	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133673600-133687600	Weak transcription	Hela-S3	cervix
2	chr6:133674000-133689800	Weak transcription	A549	lung
3	chr6:133678800-133681000	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr6:133679000-133687400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:133679400-133682400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:133679800-133681000	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr6:133680200-133680800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:133680200-133681200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:133680200-133681200	Enhancers	Fetal Muscle Leg	muscle
10	chr6:133680400-133682000	Enhancers	Brain Anterior Caudate	brain
11	chr6:133680400-133682000	Enhancers	HSMMtube	muscle
12	chr6:133680600-133681800	Weak transcription	Psoas Muscle	Psoas
13	chr6:133680600-133684400	Weak transcription	NHLF	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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