Variant report

Variant	rs6570987
Chromosome Location	chr6:101598264-101598265
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11155851	0.81[ASN][1000 genomes]
rs1408771	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4507601	0.81[ASN][1000 genomes]
rs4512228	0.81[ASN][1000 genomes]
rs4591857	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4615397	0.81[ASN][1000 genomes]
rs6900596	0.88[ASN][1000 genomes]
rs6900880	0.88[ASN][1000 genomes]
rs6905462	0.87[ASN][1000 genomes]
rs7738579	0.81[ASN][1000 genomes]
rs9373602	0.81[ASN][1000 genomes]
rs9373605	0.87[ASN][1000 genomes]
rs9404084	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9404094	0.88[ASN][1000 genomes]
rs9498518	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1019213	chr6:101225650-101623140	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv538391	chr6:101225650-101623140	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101597600-101599000	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr6:101597800-101598800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr6:101597800-101599000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr6:101597800-101599200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:101598000-101598600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:101598200-101598400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:101598200-101599400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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