Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1408771	0.99[ASN][1000 genomes]
rs4591857	0.88[ASN][1000 genomes]
rs6570987	0.88[ASN][1000 genomes]
rs6900596	1.00[ASN][1000 genomes]
rs6905462	0.99[ASN][1000 genomes]
rs7747415	0.89[EUR][1000 genomes]
rs7762966	0.89[EUR][1000 genomes]
rs9322394	0.89[EUR][1000 genomes]
rs9373605	0.99[ASN][1000 genomes]
rs9390729	0.89[EUR][1000 genomes]
rs9399710	0.89[EUR][1000 genomes]
rs9399711	0.89[EUR][1000 genomes]
rs9404081	0.89[EUR][1000 genomes]
rs9404084	0.84[ASN][1000 genomes]
rs9404094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9498507	0.81[EUR][1000 genomes]
rs9498509	0.89[EUR][1000 genomes]
rs9498510	0.89[EUR][1000 genomes]
rs9498511	0.89[EUR][1000 genomes]
rs9498515	0.89[EUR][1000 genomes]
rs9498518	0.85[ASN][1000 genomes]
rs9498520	0.89[EUR][1000 genomes]
rs9498521	0.89[EUR][1000 genomes]
rs9498522	0.89[EUR][1000 genomes]
rs9654621	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv886458	chr6:101623345-101716365	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101647400-101653800	Weak transcription	Fetal Intestine Large	intestine
2	chr6:101648400-101655000	Weak transcription	Fetal Intestine Small	intestine
3	chr6:101651600-101652200	Active TSS	Rectal Mucosa Donor 29	rectum

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