Variant report

Variant	rs9498507
Chromosome Location	chr6:101549815-101549816
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs17061229	1.00[CEU][hapmap]
rs61382658	0.90[ASN][1000 genomes]
rs6900880	0.81[EUR][1000 genomes]
rs73508892	0.90[ASN][1000 genomes]
rs73508898	0.90[ASN][1000 genomes]
rs73510831	0.90[ASN][1000 genomes]
rs73510837	0.90[ASN][1000 genomes]
rs7747415	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7748969	0.90[ASN][1000 genomes]
rs7762966	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs817228	0.85[ASN][1000 genomes]
rs9322394	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9390729	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9399710	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9399711	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9404081	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9404094	0.81[EUR][1000 genomes]
rs9485451	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9498489	0.90[ASN][1000 genomes]
rs9498490	0.90[ASN][1000 genomes]
rs9498509	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9498510	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9498511	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9498515	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9498520	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9498521	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9498522	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9654621	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1019213	chr6:101225650-101623140	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv538391	chr6:101225650-101623140	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101549000-101563000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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