Variant report

Variant	rs9498490
Chromosome Location	chr6:101528210-101528211
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10782325	0.92[EUR][1000 genomes]
rs17061229	1.00[CEU][hapmap]
rs4376359	0.92[EUR][1000 genomes]
rs4598083	0.87[EUR][1000 genomes]
rs61382658	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61647432	0.92[EUR][1000 genomes]
rs6905979	0.92[EUR][1000 genomes]
rs6915514	0.92[EUR][1000 genomes]
rs72610831	0.92[EUR][1000 genomes]
rs73508892	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73508898	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73510831	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73510837	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7748969	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749035	0.92[EUR][1000 genomes]
rs7753454	0.92[EUR][1000 genomes]
rs7753811	0.92[EUR][1000 genomes]
rs817228	0.95[ASN][1000 genomes]
rs9322380	0.92[EUR][1000 genomes]
rs9390722	0.92[EUR][1000 genomes]
rs9390723	0.92[EUR][1000 genomes]
rs9399705	0.92[EUR][1000 genomes]
rs9399706	0.92[EUR][1000 genomes]
rs9485451	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9485453	0.92[EUR][1000 genomes]
rs9485455	0.92[EUR][1000 genomes]
rs9498478	0.80[EUR][1000 genomes]
rs9498480	0.94[EUR][1000 genomes]
rs9498481	0.94[EUR][1000 genomes]
rs9498482	0.94[EUR][1000 genomes]
rs9498484	0.92[EUR][1000 genomes]
rs9498485	0.92[EUR][1000 genomes]
rs9498488	0.92[EUR][1000 genomes]
rs9498489	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9498491	0.92[EUR][1000 genomes]
rs9498507	0.90[ASN][1000 genomes]
rs9654621	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1019213	chr6:101225650-101623140	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv538391	chr6:101225650-101623140	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101527800-101528600	Enhancers	A549	lung
2	chr6:101527800-101529000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:101527800-101529000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:101527800-101529800	Enhancers	Hela-S3	cervix
5	chr6:101527800-101533600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:101528000-101528600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:101528000-101529000	Enhancers	HMEC	breast
8	chr6:101528200-101528600	Enhancers	Aorta	Aorta
9	chr6:101528200-101528800	Enhancers	NHEK	skin
10	chr6:101528200-101529200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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