Variant report

Variant	rs6572281
Chromosome Location	chr14:45339725-45339726
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10145267	0.86[CHB][hapmap]
rs10150646	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10483549	0.88[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11845904	1.00[JPT][hapmap]
rs11847039	0.91[ASN][1000 genomes]
rs11847113	0.91[ASN][1000 genomes]
rs11848334	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11851218	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11851357	0.91[ASN][1000 genomes]
rs11851962	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11852210	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1593278	0.91[ASN][1000 genomes]
rs1593279	0.91[ASN][1000 genomes]
rs17092465	0.82[EUR][1000 genomes]
rs17092468	0.91[ASN][1000 genomes]
rs17115611	0.80[EUR][1000 genomes]
rs17115612	0.82[EUR][1000 genomes]
rs17115619	0.82[EUR][1000 genomes]
rs17115633	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17115639	0.91[ASN][1000 genomes]
rs17115642	0.88[ASN][1000 genomes]
rs17115646	0.91[ASN][1000 genomes]
rs17115648	0.91[ASN][1000 genomes]
rs17115651	0.91[ASN][1000 genomes]
rs17115652	0.91[ASN][1000 genomes]
rs17115657	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17115667	0.85[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs17115674	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs17115677	1.00[CHB][hapmap]
rs2295157	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2295158	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs2295160	0.87[EUR][1000 genomes]
rs28419436	0.85[ASN][1000 genomes]
rs28432035	0.88[ASN][1000 genomes]
rs3825629	0.86[CHB][hapmap]
rs58338525	0.91[ASN][1000 genomes]
rs58671853	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61326615	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61332203	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6572290	1.00[CHB][hapmap]
rs7140739	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7161626	1.00[CHB][hapmap];0.88[JPT][hapmap];0.96[ASN][1000 genomes]
rs722706	0.91[ASN][1000 genomes]
rs72474137	0.85[EUR][1000 genomes]
rs72671096	0.80[ASN][1000 genomes]
rs73345279	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7492763	0.88[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs8003020	0.91[ASN][1000 genomes]
rs8009677	0.91[ASN][1000 genomes]
rs8011828	0.85[CHB][hapmap];0.88[JPT][hapmap];0.84[YRI][hapmap]
rs8016855	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869289	chr14:44752382-45447415	Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv901832	chr14:44847444-45415597	Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv995092	chr14:44973489-45393462	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	nsv1047886	chr14:45189653-45543182	Strong transcription Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv542079	chr14:45189653-45543182	Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	nsv901841	chr14:45198196-45719643	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
7	nsv1053437	chr14:45232269-45424222	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	nsv1039820	chr14:45298012-45361409	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1051860	chr14:45303778-45339780	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6572281	RP11-398E10.1	cis	lung	GTEx
rs6572281	RP11-398E10.1	cis	Nerve Tibial	GTEx

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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