Variant report

Variant	rs17115639
Chromosome Location	chr14:45311579-45311580
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 164 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:151)

rs_ID	r²[population]
rs10083439	0.89[EUR][1000 genomes]
rs10129173	0.85[EUR][1000 genomes]
rs10132389	0.82[CEU][hapmap]
rs10132949	0.82[CEU][hapmap]
rs10134071	0.81[EUR][1000 genomes]
rs10135890	0.81[EUR][1000 genomes]
rs10136855	0.85[EUR][1000 genomes]
rs10139998	0.85[EUR][1000 genomes]
rs10140013	0.83[EUR][1000 genomes]
rs10140049	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs10140108	0.87[EUR][1000 genomes]
rs10140222	0.81[EUR][1000 genomes]
rs10140318	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs10145092	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs10145267	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs10146395	0.81[EUR][1000 genomes]
rs10147499	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs10149484	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs10150646	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes]
rs10152101	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs10483549	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11157423	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs11157424	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs11845088	0.85[EUR][1000 genomes]
rs11845904	1.00[CEU][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes]
rs11845956	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs11846656	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs11847039	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11847113	1.00[ASN][1000 genomes]
rs11848334	1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes]
rs11848799	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs11849208	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs11849583	0.85[EUR][1000 genomes]
rs11850363	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs11851218	1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes]
rs11851357	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11851516	0.89[EUR][1000 genomes]
rs11851962	1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes]
rs11852210	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes]
rs12100842	0.81[EUR][1000 genomes]
rs1593278	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1593279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17092468	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17115633	1.00[ASN][1000 genomes]
rs17115642	0.96[ASN][1000 genomes]
rs17115646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17115648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17115651	1.00[ASN][1000 genomes]
rs17115652	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17115657	0.95[ASN][1000 genomes]
rs17115667	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17115674	0.88[JPT][hapmap]
rs17115677	0.85[CHB][hapmap];0.89[EUR][1000 genomes]
rs17115688	0.89[EUR][1000 genomes]
rs17115703	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs17115718	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs17115787	0.81[EUR][1000 genomes]
rs2295157	1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes]
rs2295158	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs28419436	0.84[ASN][1000 genomes]
rs28432035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28448551	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs28517769	0.85[EUR][1000 genomes]
rs28558522	0.87[EUR][1000 genomes]
rs28572336	0.81[EUR][1000 genomes]
rs28594810	0.81[EUR][1000 genomes]
rs28622413	0.81[EUR][1000 genomes]
rs28681969	0.81[EUR][1000 genomes]
rs28695721	0.87[EUR][1000 genomes]
rs28703636	0.85[EUR][1000 genomes]
rs2899960	0.85[EUR][1000 genomes]
rs3736747	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs3825629	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs56386358	0.86[EUR][1000 genomes]
rs56706956	0.81[EUR][1000 genomes]
rs57129780	0.87[EUR][1000 genomes]
rs57147026	0.84[EUR][1000 genomes]
rs57614513	0.81[EUR][1000 genomes]
rs57694277	0.81[EUR][1000 genomes]
rs58013518	0.89[EUR][1000 genomes]
rs58338525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58671853	0.91[ASN][1000 genomes]
rs58920861	0.89[EUR][1000 genomes]
rs59992752	0.89[EUR][1000 genomes]
rs60521816	0.89[EUR][1000 genomes]
rs60595870	0.87[EUR][1000 genomes]
rs60891427	0.81[EUR][1000 genomes]
rs61326615	0.91[ASN][1000 genomes]
rs61332203	0.91[ASN][1000 genomes]
rs61707578	0.81[EUR][1000 genomes]
rs6572281	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs6572290	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[EUR][1000 genomes]
rs66488071	0.85[EUR][1000 genomes]
rs66535982	0.85[EUR][1000 genomes]
rs66662385	0.87[EUR][1000 genomes]
rs67643245	0.85[EUR][1000 genomes]
rs7140739	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes]
rs7145831	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7145870	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs7147811	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs7151557	0.87[EUR][1000 genomes]
rs7158846	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs7161626	0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs722706	1.00[ASN][1000 genomes]
rs72671096	0.90[ASN][1000 genomes]
rs73334104	0.89[EUR][1000 genomes]
rs73334112	0.89[EUR][1000 genomes]
rs73334114	0.89[EUR][1000 genomes]
rs73334131	0.89[EUR][1000 genomes]
rs73334135	0.87[EUR][1000 genomes]
rs73334148	0.87[EUR][1000 genomes]
rs73334154	0.87[EUR][1000 genomes]
rs73334157	0.87[EUR][1000 genomes]
rs73334162	0.87[EUR][1000 genomes]
rs73334165	0.87[EUR][1000 genomes]
rs73334172	0.87[EUR][1000 genomes]
rs73334176	0.87[EUR][1000 genomes]
rs73334913	0.81[EUR][1000 genomes]
rs73345279	0.91[ASN][1000 genomes]
rs73346336	0.83[EUR][1000 genomes]
rs73346344	0.87[EUR][1000 genomes]
rs73346351	0.85[EUR][1000 genomes]
rs73346360	0.85[EUR][1000 genomes]
rs73348069	0.81[EUR][1000 genomes]
rs73348076	0.81[EUR][1000 genomes]
rs73348079	0.81[EUR][1000 genomes]
rs73348088	0.81[EUR][1000 genomes]
rs73348095	0.81[EUR][1000 genomes]
rs73348939	0.89[EUR][1000 genomes]
rs73348947	0.89[EUR][1000 genomes]
rs73348950	0.89[EUR][1000 genomes]
rs73348953	0.89[EUR][1000 genomes]
rs73348959	0.89[EUR][1000 genomes]
rs73348966	0.92[EUR][1000 genomes]
rs73348975	0.87[EUR][1000 genomes]
rs73348977	0.83[EUR][1000 genomes]
rs73348981	0.89[EUR][1000 genomes]
rs73348987	0.89[EUR][1000 genomes]
rs73350201	0.85[EUR][1000 genomes]
rs73352233	0.81[EUR][1000 genomes]
rs7492763	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7493246	0.85[EUR][1000 genomes]
rs7493823	0.81[EUR][1000 genomes]
rs8003020	1.00[ASN][1000 genomes]
rs8009677	1.00[ASN][1000 genomes]
rs8011828	1.00[JPT][hapmap]
rs8015453	0.81[EUR][1000 genomes]
rs8016855	0.95[ASN][1000 genomes]
rs8022008	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs8022608	0.81[EUR][1000 genomes]
rs9323106	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869289	chr14:44752382-45447415	Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv901832	chr14:44847444-45415597	Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv995092	chr14:44973489-45393462	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	esv2758356	chr14:45057833-45313666	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2759986	chr14:45057833-45313666	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1050829	chr14:45157388-45318232	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1047886	chr14:45189653-45543182	Strong transcription Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
8	nsv542079	chr14:45189653-45543182	Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
9	nsv901841	chr14:45198196-45719643	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
10	nsv1053437	chr14:45232269-45424222	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
11	nsv1047190	chr14:45291979-45317303	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv1039820	chr14:45298012-45361409	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv1051860	chr14:45303778-45339780	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:45305000-45314400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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