Variant report

Variant	rs73334913
Chromosome Location	chr14:45539514-45539515
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 190 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:180)

rs_ID	r²[population]
rs10083439	0.82[EUR][1000 genomes]
rs10129173	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10131066	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10131615	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10132389	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10132547	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10132949	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10134071	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10134598	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10135085	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10135890	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10136008	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10136855	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10136926	0.83[EUR][1000 genomes]
rs10138272	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10139998	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10140013	0.90[EUR][1000 genomes]
rs10140049	0.96[EUR][1000 genomes]
rs10140108	0.94[EUR][1000 genomes]
rs10140222	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10140318	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10143806	0.82[EUR][1000 genomes]
rs10145092	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10145267	0.90[EUR][1000 genomes]
rs10146395	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10147499	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10149484	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10150646	0.82[EUR][1000 genomes]
rs10152101	0.94[EUR][1000 genomes]
rs1053667	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11157423	0.94[EUR][1000 genomes]
rs11157424	0.94[EUR][1000 genomes]
rs11844832	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11845088	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11845904	0.92[EUR][1000 genomes]
rs11845956	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11846656	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11847039	0.81[EUR][1000 genomes]
rs11847336	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11848334	0.92[EUR][1000 genomes]
rs11848799	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11849208	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11849583	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11850363	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11851218	0.82[EUR][1000 genomes]
rs11851357	0.81[EUR][1000 genomes]
rs11851516	0.82[EUR][1000 genomes]
rs11851962	0.92[EUR][1000 genomes]
rs11852210	0.92[EUR][1000 genomes]
rs12100842	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1593279	0.81[EUR][1000 genomes]
rs17115639	0.81[EUR][1000 genomes]
rs17115646	0.81[EUR][1000 genomes]
rs17115648	0.81[EUR][1000 genomes]
rs17115652	0.81[EUR][1000 genomes]
rs17115677	0.82[EUR][1000 genomes]
rs17115688	0.92[EUR][1000 genomes]
rs17115703	0.94[EUR][1000 genomes]
rs17115718	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17115787	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17115809	0.82[EUR][1000 genomes]
rs17115811	0.82[EUR][1000 genomes]
rs2295157	0.82[EUR][1000 genomes]
rs28432035	0.81[EUR][1000 genomes]
rs28448551	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28517769	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28558522	0.94[EUR][1000 genomes]
rs28572336	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28594810	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28622413	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28637857	0.82[EUR][1000 genomes]
rs28681969	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28695721	0.94[EUR][1000 genomes]
rs28703636	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28756151	0.94[EUR][1000 genomes]
rs2899960	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3783702	0.82[EUR][1000 genomes]
rs3825627	0.82[EUR][1000 genomes]
rs3825628	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3825629	0.96[EUR][1000 genomes]
rs4141578	0.84[ASN][1000 genomes]
rs56706956	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56836063	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57003561	0.82[EUR][1000 genomes]
rs57129780	0.90[EUR][1000 genomes]
rs57602646	0.82[EUR][1000 genomes]
rs57614513	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57694277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58013518	0.92[EUR][1000 genomes]
rs58338525	0.81[EUR][1000 genomes]
rs58826926	0.82[EUR][1000 genomes]
rs58920861	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59353994	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59992752	0.82[EUR][1000 genomes]
rs60521816	0.82[EUR][1000 genomes]
rs60595870	0.80[EUR][1000 genomes]
rs60891427	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61155826	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61707578	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6572290	0.92[EUR][1000 genomes]
rs66488071	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66535982	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66662385	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67643245	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7140739	0.82[EUR][1000 genomes]
rs7145831	0.96[EUR][1000 genomes]
rs7145870	0.94[EUR][1000 genomes]
rs7146566	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7147644	0.84[ASN][1000 genomes]
rs7147811	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7151557	0.90[EUR][1000 genomes]
rs7158846	0.94[EUR][1000 genomes]
rs7161603	0.81[EUR][1000 genomes]
rs72474138	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72621070	0.84[ASN][1000 genomes]
rs73334104	0.92[EUR][1000 genomes]
rs73334112	0.92[EUR][1000 genomes]
rs73334114	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73334131	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73334135	0.94[EUR][1000 genomes]
rs73334148	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73334154	0.94[EUR][1000 genomes]
rs73334157	0.94[EUR][1000 genomes]
rs73334162	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73334165	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73334172	0.94[EUR][1000 genomes]
rs73334176	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73340611	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73340622	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73340626	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73340655	0.86[AMR][1000 genomes]
rs73346336	0.90[EUR][1000 genomes]
rs73346344	0.94[EUR][1000 genomes]
rs73346351	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73346360	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73348060	0.83[ASN][1000 genomes]
rs73348062	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs73348065	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73348069	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73348075	0.84[ASN][1000 genomes]
rs73348076	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73348079	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73348088	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73348095	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73348285	0.84[ASN][1000 genomes]
rs73348939	0.82[EUR][1000 genomes]
rs73348947	0.82[EUR][1000 genomes]
rs73348950	0.82[EUR][1000 genomes]
rs73348953	0.82[EUR][1000 genomes]
rs73348959	0.82[EUR][1000 genomes]
rs73348966	0.88[EUR][1000 genomes]
rs73348975	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73348977	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73348981	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73348987	0.92[EUR][1000 genomes]
rs73349816	0.97[ASN][1000 genomes]
rs73349820	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73349842	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs73349853	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73349857	0.82[EUR][1000 genomes]
rs73349858	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73349868	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73350201	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73352233	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73352238	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73352246	0.84[ASN][1000 genomes]
rs73353641	0.95[ASN][1000 genomes]
rs73353644	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73353647	0.98[ASN][1000 genomes]
rs73353650	0.98[ASN][1000 genomes]
rs73353657	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7493246	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7493823	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8006685	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8015453	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8018380	0.81[EUR][1000 genomes]
rs8022008	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8022499	0.82[EUR][1000 genomes]
rs8022608	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9323106	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047886	chr14:45189653-45543182	Strong transcription Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv542079	chr14:45189653-45543182	Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv901841	chr14:45198196-45719643	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	esv1795667	chr14:45361680-45721052	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	esv1794986	chr14:45368685-45650813	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
6	esv1803131	chr14:45441932-45726848	Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	nsv933364	chr14:45467086-45705844	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
8	nsv901842	chr14:45506857-45713358	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
9	nsv901843	chr14:45506857-45833490	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
10	nsv832785	chr14:45520670-45710741	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:45465800-45552600	Weak transcription	HMEC	breast
2	chr14:45482800-45545400	Weak transcription	NHDF-Ad	bronchial
3	chr14:45508000-45540000	Weak transcription	K562	blood
4	chr14:45508400-45540800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr14:45508400-45552400	Weak transcription	GM12878-XiMat	blood
6	chr14:45508400-45552600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr14:45509000-45541400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr14:45509200-45543400	Weak transcription	Lung	lung
9	chr14:45509200-45552600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr14:45509200-45552600	Weak transcription	Aorta	Aorta
11	chr14:45509200-45552600	Weak transcription	Pancreas	Pancrea
12	chr14:45509200-45552800	Weak transcription	Right Ventricle	heart
13	chr14:45509200-45553000	Weak transcription	Gastric	stomach
14	chr14:45515800-45543000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr14:45516200-45552600	Weak transcription	Thymus	Thymus
16	chr14:45516400-45552600	Weak transcription	NH-A	brain
17	chr14:45516400-45552800	Weak transcription	Fetal Brain Male	brain
18	chr14:45516800-45552600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr14:45519400-45539800	Weak transcription	HUVEC	blood vessel
20	chr14:45521400-45542000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr14:45522200-45541200	Weak transcription	Adipose Nuclei	Adipose
22	chr14:45524200-45552600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr14:45524600-45545200	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr14:45524600-45545200	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr14:45524600-45552400	Weak transcription	Primary B cells from peripheral blood	blood
26	chr14:45524600-45552600	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr14:45524800-45541000	Weak transcription	Brain Substantia Nigra	brain
28	chr14:45524800-45541200	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr14:45524800-45541600	Weak transcription	Fetal Muscle Trunk	muscle
30	chr14:45524800-45542400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr14:45524800-45542400	Weak transcription	Fetal Thymus	thymus
32	chr14:45524800-45542400	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr14:45524800-45543000	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr14:45524800-45544400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr14:45524800-45551800	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr14:45524800-45552400	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr14:45524800-45552400	Weak transcription	Dnd41	blood
38	chr14:45524800-45552600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr14:45524800-45552600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr14:45524800-45552600	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr14:45524800-45552800	Weak transcription	Placenta	Placenta
42	chr14:45524800-45553400	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr14:45525000-45542200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr14:45525800-45552600	Weak transcription	Brain Angular Gyrus	brain
45	chr14:45526200-45552400	Weak transcription	Primary B cells from cord blood	blood
46	chr14:45526800-45542200	Weak transcription	Primary hematopoietic stem cells	blood
47	chr14:45526800-45542400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr14:45526800-45552400	Weak transcription	Brain Anterior Caudate	brain
49	chr14:45527200-45551800	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr14:45528600-45550800	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links