Variant report

Variant	rs10134598
Chromosome Location	chr14:45552365-45552366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:7)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:45552240-45552440	MCF10A-Er-Src	breast:	n/a	n/a
2	MXI1	chr14:45552259-45554589	IMR90	lung:	n/a	chr14:45553275-45553284
3	POLR2A	chr14:45552301-45553981	GM12891	blood:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:45552187..45554745-chr9:139890498..139892780,2	MCF-7	breast:
2	chr14:45430787..45433021-chr14:45551879..45555162,3	K562	blood:
3	chr14:45551908..45554831-chr14:45578936..45581671,3	MCF-7	breast:
4	chr14:45430704..45432872-chr14:45551768..45554827,3	K562	blood:
5	chr14:45552156..45555644-chr14:45564630..45569930,7	MCF-7	breast:
6	chr14:45552000..45555852-chr14:45600098..45605984,10	MCF-7	breast:
7	chr14:45552300..45554795-chr14:45602332..45605115,2	K562	blood:
8	chr14:45429808..45433002-chr14:45552349..45555813,4	MCF-7	breast:

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FKBP3-1	chr14:45552352-45552590	ENSG00000249163
2	lnc-FKBP3-1	chr14:45552279-45552604	XLOC_011011
3	lnc-FKBP3-1	chr14:45552352-45552590	XLOC_011011
4	lnc-FKBP3-1	chr14:45552347-45552586	XLOC_011011
5	lnc-FKBP3-1	chr14:45552248-45552590	ENSG00000249163
6	lnc-FKBP3-1	chr14:45552352-45552590	ENSG00000249163
7	lnc-FKBP3-1	chr14:45552346-45552586	NONHSAT036637

No data

Variant related genes	Relation type
PRPF39	TF binding region
ENSG00000198718	Chromatin interaction
ENSG00000187790	Chromatin interaction
ENSG00000100442	Chromatin interaction
ENSG00000179454	Chromatin interaction
ENSG00000185246	Chromatin interaction
ENSG00000239043	Chromatin interaction
ENSG00000169583	Chromatin interaction

Extended variants
information (count: 157 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:149)

rs_ID	r²[population]
rs10129173	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10130368	1.00[CEU][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes]
rs10130377	1.00[CEU][hapmap];0.84[JPT][hapmap];0.81[YRI][hapmap];0.84[EUR][1000 genomes]
rs10131066	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10131615	0.88[ASW][hapmap];0.89[CHD][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.88[TSI][hapmap];0.89[YRI][hapmap];0.97[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10132389	0.86[YRI][hapmap];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10132547	0.88[ASW][hapmap];0.89[JPT][hapmap];0.84[MEX][hapmap];0.82[MKK][hapmap];0.88[TSI][hapmap];0.86[YRI][hapmap];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10132949	0.88[ASW][hapmap];0.82[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10134071	0.88[ASW][hapmap];0.89[CHD][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.88[TSI][hapmap];0.93[YRI][hapmap];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10135085	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.94[TSI][hapmap];0.93[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10135890	1.00[ASW][hapmap];0.89[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.88[TSI][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs10136008	0.85[EUR][1000 genomes]
rs10136855	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10136926	0.80[AMR][1000 genomes]
rs10138272	0.88[JPT][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10138997	0.88[ASW][hapmap];1.00[CEU][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.86[YRI][hapmap];0.86[EUR][1000 genomes]
rs10139998	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10140013	0.82[AMR][1000 genomes]
rs10140049	0.88[ASW][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.88[TSI][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10140108	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10140222	0.88[ASW][hapmap];0.89[JPT][hapmap];0.83[MEX][hapmap];0.81[MKK][hapmap];0.86[YRI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10140318	0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10141474	1.00[CEU][hapmap];0.87[JPT][hapmap];0.81[YRI][hapmap];0.84[EUR][1000 genomes]
rs10143806	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10145092	0.83[ASW][hapmap];0.81[GIH][hapmap];0.88[JPT][hapmap];0.82[MKK][hapmap];0.88[TSI][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10145267	0.89[JPT][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes]
rs10146395	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10147499	0.89[JPT][hapmap];0.89[YRI][hapmap];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10149484	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10150646	0.82[GIH][hapmap];0.84[MEX][hapmap];0.82[TSI][hapmap]
rs10152101	0.83[ASW][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1053667	0.89[JPT][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11157423	0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11157424	0.83[ASW][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11157433	0.86[MKK][hapmap]
rs11844832	0.89[JPT][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11845088	0.89[JPT][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11845507	0.86[MKK][hapmap]
rs11845904	0.88[TSI][hapmap]
rs11845956	0.88[ASW][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.88[TSI][hapmap];0.89[YRI][hapmap];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11846656	0.88[TSI][hapmap];0.83[EUR][1000 genomes]
rs11847336	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11848799	0.89[JPT][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs11849208	0.89[JPT][hapmap];0.87[EUR][1000 genomes]
rs11849583	0.83[EUR][1000 genomes]
rs11850363	0.89[JPT][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11852210	0.88[TSI][hapmap]
rs12100842	1.00[ASW][hapmap];0.89[CHD][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.82[TSI][hapmap];0.90[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17115703	0.89[JPT][hapmap];0.81[EUR][1000 genomes]
rs17115718	0.89[JPT][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17115787	0.88[ASW][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.88[TSI][hapmap];0.86[YRI][hapmap];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17115809	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.94[TSI][hapmap];0.93[YRI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17115811	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.82[MKK][hapmap];0.94[TSI][hapmap];0.93[YRI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2016738	1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2033385	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];0.89[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.89[TSI][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs28370281	0.86[EUR][1000 genomes]
rs28448551	0.88[ASW][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.83[YRI][hapmap];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28517769	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28558522	0.81[EUR][1000 genomes]
rs28572336	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28594810	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28622413	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28637857	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.94[TSI][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28681969	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28695721	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28703636	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28756151	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2899960	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3783700	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs3783702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3825625	0.88[ASW][hapmap];1.00[CEU][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.86[YRI][hapmap];0.86[EUR][1000 genomes]
rs3825627	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3825628	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3825629	0.89[JPT][hapmap];0.86[YRI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4141578	0.89[JPT][hapmap]
rs4906568	0.86[MKK][hapmap]
rs56706956	0.87[EUR][1000 genomes]
rs56836063	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57003561	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57602646	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57614513	0.87[EUR][1000 genomes]
rs57694277	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58826926	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59353994	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60891427	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61155826	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61707578	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6572290	0.88[TSI][hapmap]
rs6572296	0.82[MKK][hapmap]
rs66488071	0.83[EUR][1000 genomes]
rs66535982	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs66662385	0.81[EUR][1000 genomes]
rs67643245	0.83[EUR][1000 genomes]
rs7140739	0.82[GIH][hapmap];0.84[MEX][hapmap];0.82[TSI][hapmap]
rs7145831	0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7145870	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7146566	0.89[JPT][hapmap];0.93[YRI][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7147644	0.89[JPT][hapmap]
rs7147811	0.85[AMR][1000 genomes]
rs7148613	0.86[MKK][hapmap]
rs7158846	0.83[ASW][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.83[YRI][hapmap];0.81[EUR][1000 genomes]
rs7161603	0.80[AMR][1000 genomes]
rs72474138	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73334135	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73334148	0.81[EUR][1000 genomes]
rs73334154	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73334157	0.81[EUR][1000 genomes]
rs73334162	0.81[EUR][1000 genomes]
rs73334165	0.81[EUR][1000 genomes]
rs73334172	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73334176	0.81[EUR][1000 genomes]
rs73334913	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73340611	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73340622	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73340626	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73340655	0.86[EUR][1000 genomes]
rs73340659	0.86[EUR][1000 genomes]
rs73346344	0.81[EUR][1000 genomes]
rs73346351	0.83[EUR][1000 genomes]
rs73346360	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73348065	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73348069	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73348076	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73348079	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73348088	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73348095	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73349816	0.85[ASN][1000 genomes]
rs73349820	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73349835	0.98[ASN][1000 genomes]
rs73349842	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73349853	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73349857	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73349858	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73349868	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73350201	0.83[EUR][1000 genomes]
rs73352233	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73352238	0.83[EUR][1000 genomes]
rs73353644	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73353657	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7493246	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7493823	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8006685	0.88[ASW][hapmap];0.89[CHD][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.89[YRI][hapmap];0.97[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs8009193	0.88[ASW][hapmap];1.00[CEU][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.86[YRI][hapmap];0.86[EUR][1000 genomes]
rs8015453	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8017844	0.88[ASW][hapmap];1.00[CEU][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.86[YRI][hapmap];0.86[EUR][1000 genomes]
rs8022008	0.88[ASW][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8022499	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8022608	1.00[CEU][hapmap];0.89[JPT][hapmap];0.89[YRI][hapmap];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9323106	0.89[JPT][hapmap];0.89[YRI][hapmap];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901841	chr14:45198196-45719643	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	esv1795667	chr14:45361680-45721052	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	esv1794986	chr14:45368685-45650813	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	esv1803131	chr14:45441932-45726848	Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv933364	chr14:45467086-45705844	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv901842	chr14:45506857-45713358	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv901843	chr14:45506857-45833490	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
8	nsv832785	chr14:45520670-45710741	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10134598	FANCM	cis	lymphoblastoid	seeQTL

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:45465800-45552600	Weak transcription	HMEC	breast
2	chr14:45508400-45552400	Weak transcription	GM12878-XiMat	blood
3	chr14:45508400-45552600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr14:45509200-45552600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:45509200-45552600	Weak transcription	Aorta	Aorta
6	chr14:45509200-45552600	Weak transcription	Pancreas	Pancrea
7	chr14:45509200-45552800	Weak transcription	Right Ventricle	heart
8	chr14:45509200-45553000	Weak transcription	Gastric	stomach
9	chr14:45516200-45552600	Weak transcription	Thymus	Thymus
10	chr14:45516400-45552600	Weak transcription	NH-A	brain
11	chr14:45516400-45552800	Weak transcription	Fetal Brain Male	brain
12	chr14:45516800-45552600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr14:45524200-45552600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr14:45524600-45552400	Weak transcription	Primary B cells from peripheral blood	blood
15	chr14:45524600-45552600	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr14:45524800-45552400	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr14:45524800-45552400	Weak transcription	Dnd41	blood
18	chr14:45524800-45552600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr14:45524800-45552600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr14:45524800-45552600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr14:45524800-45552800	Weak transcription	Placenta	Placenta
22	chr14:45524800-45553400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr14:45525800-45552600	Weak transcription	Brain Angular Gyrus	brain
24	chr14:45526200-45552400	Weak transcription	Primary B cells from cord blood	blood
25	chr14:45526800-45552400	Weak transcription	Brain Anterior Caudate	brain
26	chr14:45529000-45552600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr14:45529200-45552600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr14:45535200-45552400	Weak transcription	Brain Hippocampus Middle	brain
29	chr14:45535400-45552600	Weak transcription	HSMM	muscle
30	chr14:45535400-45552600	Weak transcription	Osteobl	bone
31	chr14:45535600-45552400	Weak transcription	Primary T cells from cord blood	blood
32	chr14:45535600-45552600	Weak transcription	Colon Smooth Muscle	Colon
33	chr14:45535600-45552600	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr14:45535600-45553000	Weak transcription	Small Intestine	intestine
35	chr14:45539600-45552600	Weak transcription	Brain Germinal Matrix	brain
36	chr14:45539600-45552600	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr14:45539600-45552600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr14:45539600-45552600	Weak transcription	Fetal Lung	lung
39	chr14:45539800-45552600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr14:45539800-45552600	Weak transcription	Stomach Smooth Muscle	stomach
41	chr14:45540000-45552600	Weak transcription	Fetal Kidney	kidney
42	chr14:45540400-45552600	Weak transcription	Ovary	ovary
43	chr14:45541600-45552600	Weak transcription	Brain Substantia Nigra	brain
44	chr14:45542000-45552600	Weak transcription	Fetal Stomach	stomach
45	chr14:45543000-45552400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr14:45543000-45552600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr14:45543000-45552600	Weak transcription	Adipose Nuclei	Adipose
48	chr14:45543000-45552600	Weak transcription	Fetal Thymus	thymus
49	chr14:45543000-45552600	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr14:45543000-45552800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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